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2
votes
1
reply
3.7k
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Lmer() for RNA-seq with batch as random effect: how to prepare input?
lmer rna-seq batch mixed model
updated 4.7 years ago by 39k • written 7.3 years ago by ▴ 120
0
votes
8
replies
1.8k
views
Why do RNA-seq reads not map against clones?
trinity rsem clone mapping RNA-Seq
updated 10 months ago by 39k • written 7.3 years ago by ▴ 120
0
votes
0
replies
1.8k
views
Comment: C: Why do RNA-seq reads not map against clones?
updated 4.7 years ago by 39k • written 7.3 years ago by ▴ 120
0
votes
1
reply
1.8k
views
Comment: C: Why do RNA-seq reads not map against clones?
updated 4.7 years ago by 39k • written 7.3 years ago by ▴ 120
1
vote
5
replies
3.2k
views
RNA-seq mapper that allows variability and handles multi-mapping?
RNA-Seq mapping
7.2 years ago by Ekarl2 ▴ 120
5
votes
2
replies
4.3k
views
How to handle Trinity post-filtering singletons from paired-end sequencing?
singletons paired-end Trinity
updated 5 months ago by 39k • written 7.9 years ago by ▴ 120
0
votes
0
replies
1.8k
views
Comment: C: Why do RNA-seq reads not map against clones?
7.3 years ago by Ekarl2 ▴ 120
0
votes
1
reply
1.8k
views
Comment: Comment: Why do RNA-seq reads not map against clones?
updated 10 months ago by 39k • written 7.3 years ago by ▴ 120
3
votes
0
replies
3.4k
views
Is the following code appropriate for making a reasonable RNA-seq clustered heat map?
RNA-Seq heatmap scaling
7.4 years ago by Ekarl2 ▴ 120
0
votes
0
replies
2.5k
views
Comment: C: Can FPKM be added?
7.6 years ago by Ekarl2 ▴ 120
12
votes
3
replies
2.5k
views
Can FPKM be added?
FPKM RNA-seq
updated 9 months ago by 39k • written 7.6 years ago by ▴ 120
0
votes
1
reply
2.8k
views
EdgeR: Correcting for lane effects in addition to replicate batch effects?
edgeR batch-effect lane-effect
updated 8 months ago by 39k • written 7.7 years ago by ▴ 120
0
votes
1
reply
1.9k
views
Comment: C: What is the Trinity setting max_pct_stdev?
8.1 years ago by Ekarl2 ▴ 120
3
votes
3
replies
1.9k
views
What is the Trinity setting max_pct_stdev?
trinity RNA-Seq max_pct_stdev
updated 11 months ago by 39k • written 8.1 years ago by ▴ 120
0
votes
0
replies
7.8k
views
Comment: C: RNA-seq, EdgeR and batch effects
8.4 years ago by Ekarl2 ▴ 120
0
votes
0
replies
7.8k
views
Comment: C: RNA-seq, EdgeR and batch effects
8.4 years ago by Ekarl2 ▴ 120
3
votes
6
replies
7.8k
views
RNA-seq, EdgeR and batch effects
RNA-Seq edgeR batch effects removeBatchEffect()
updated 8.4 years ago by 103k • written 8.4 years ago by ▴ 120
1
vote
1
reply
7.8k
views
Comment: C: RNA-seq, EdgeR and batch effects
8.4 years ago by Ekarl2 ▴ 120
0
votes
0
replies
4.3k
views
Comment: C: Within-sample comparison of TMM normalized values?
8.5 years ago by Ekarl2 ▴ 120
0
votes
1
reply
4.3k
views
Comment: C: Within-sample comparison of TMM normalized values?
8.5 years ago by Ekarl2 ▴ 120
0
votes
1
reply
4.3k
views
Comment: C: Within-sample comparison of TMM normalized values?
8.5 years ago by Ekarl2 ▴ 120
7
votes
6
replies
4.3k
views
Within-sample comparison of TMM normalized values?
within-sample TMM RNA-Seq
updated 15 months ago by 39k • written 8.5 years ago by ▴ 120
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