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Comment: C: Visualizing alignment of kallisto .bam files to hg19 (and custom plasmids)
7.0 years ago by Kristin Muench ▴ 640
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0
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4.8k
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Comment: C: Visualizing alignment of kallisto .bam files to hg19 (and custom plasmids)
7.0 years ago by Kristin Muench ▴ 640
0
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0
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4.8k
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Comment: C: Visualizing alignment of kallisto .bam files to hg19 (and custom plasmids)
7.0 years ago by Kristin Muench ▴ 640
0
votes
0
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4.8k
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Comment: C: Visualizing alignment of kallisto .bam files to hg19 (and custom plasmids)
7.0 years ago by Kristin Muench ▴ 640
0
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0
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4.8k
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Comment: C: Visualizing alignment of kallisto .bam files to hg19 (and custom plasmids)
7.0 years ago by Kristin Muench ▴ 640
2
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7
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4.8k
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Visualizing alignment of kallisto .bam files to hg19 (and custom plasmids)
IGV kallisto RNA-Seq
updated 7.0 years ago by ▴ 130 • written 7.0 years ago by ▴ 640
11
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36
replies
8.1k
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Design in DESeq: Can you combine explicit and implicit batch effect correction in (SVA+Metadata Variables)?
SVA batch-effect DESeq2 R
updated 17 months ago by 45k • written 7.1 years ago by ▴ 640
0
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1
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17k
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Comment: A: How to download human reference transcriptome (hg19)
7.1 years ago by Kristin Muench ▴ 640
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0
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8.1k
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Comment: C: Design in DESeq: Can you combine explicit and implicit batch effect correction i
7.1 years ago by Kristin Muench ▴ 640
0
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1
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8.1k
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Comment: C: Design in DESeq: Can you combine explicit and implicit batch effect correction i
7.1 years ago by Kristin Muench ▴ 640
1
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0
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4.9k
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Answer: A: Heat map of DE genes identified in Graph based clustering of ScRNA-Seq
7.1 years ago by Kristin Muench ▴ 640
0
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1
reply
8.1k
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Comment: C: Design in DESeq: Can you combine explicit and implicit batch effect correction i
7.1 years ago by Kristin Muench ▴ 640
0
votes
1
reply
11k
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Comment: C: How many reads should I expect for paired end reads when coverage = 30 million?
7.1 years ago by Kristin Muench ▴ 640
1
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0
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11k
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Comment: C: How many reads should I expect for paired end reads when coverage = 30 million?
7.1 years ago by Kristin Muench ▴ 640
0
votes
1
reply
8.1k
views
Comment: C: Design in DESeq: Can you combine explicit and implicit batch effect correction i
7.1 years ago by Kristin Muench ▴ 640
0
votes
0
replies
8.1k
views
Comment: C: Design in DESeq: Can you combine explicit and implicit batch effect correction i
7.1 years ago by Kristin Muench ▴ 640
0
votes
1
reply
5.9k
views
Comment: C: kallisto pseudoaligned bam files to IGV
7.1 years ago by Kristin Muench ▴ 640
0
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1
reply
16k
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Comment: C: Making a heatmap: sample vs. fold change
7.1 years ago by Kristin Muench ▴ 640
4
votes
6
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16k
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Making a heatmap: sample vs. fold change
RNA-Seq R heatmap DESeq2
updated 4.0 years ago by ▴ 10 • written 7.1 years ago by ▴ 640
0
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0
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2.3k
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Comment: C: Help understanding the meaning of variables in DESeq design matrix
7.1 years ago by Kristin Muench ▴ 640
3
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2
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2.3k
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Help understanding the meaning of variables in DESeq design matrix
DESeq2 RNA-Seq R
updated 7.1 years ago by 105k • written 7.1 years ago by ▴ 640
0
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0
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7.8k
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Comment: C: Multi-factor analysis with DESeq: which approach is correct?
7.1 years ago by Kristin Muench ▴ 640
0
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1
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7.8k
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Comment: C: Multi-factor analysis with DESeq: which approach is correct?
7.1 years ago by Kristin Muench ▴ 640
0
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1
reply
7.8k
views
Comment: C: Multi-factor analysis with DESeq: which approach is correct?
7.1 years ago by Kristin Muench ▴ 640
4
votes
6
replies
7.8k
views
Multi-factor analysis with DESeq: which approach is correct?
RNA-Seq DESeq2 R
updated 7.1 years ago by 105k • written 7.1 years ago by ▴ 640
18
votes
9
replies
10k
views
Error in (function...) thrown by WGCNA tutorial (R)
WGCNA RNA-Seq R
updated 7.3 years ago by ▴ 90 • written 7.5 years ago by ▴ 640
0
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1
reply
5.6k
views
Comment: C: Kallisto will not produce .bam files
7.4 years ago by Kristin Muench ▴ 640
9
votes
15
replies
5.6k
views
Kallisto will not produce .bam files
kallisto RNA-Seq
updated 7.4 years ago by 89k • written 7.4 years ago by ▴ 640
33
votes
5
replies
18k
views
9 follow
Forum: How do I explain to my non-bioinformatician labmates how to interpret principal components?
RNA-Seq communication analysis pca
updated 3.1 years ago by 45k • written 9.7 years ago by ▴ 640
10
votes
6
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6.9k
views
Should kallisto take hours to run?
kallisto RNA-Seq
7.5 years ago by Kristin Muench ▴ 640
0
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2
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6.9k
views
Comment: C: Should kallisto take hours to run?
7.5 years ago by Kristin Muench ▴ 640
0
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1
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6.9k
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Comment: C: Should kallisto take hours to run?
7.5 years ago by Kristin Muench ▴ 640
1
vote
1
reply
10k
views
Comment: C: Error in (function...) thrown by WGCNA tutorial (R)
7.5 years ago by Kristin Muench ▴ 640
1
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0
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4.8k
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Comment: C: Adding plasmid sequences to gtf file
7.5 years ago by Kristin Muench ▴ 640
0
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0
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4.4k
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Comment: C: [STAR] Why are there so many more mapped reads than unmapped reads in my .sam ou
7.6 years ago by Kristin Muench ▴ 640
2
votes
6
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4.4k
views
[STAR] Why are there so many more mapped reads than unmapped reads in my .sam output file?
RNA-Seq star
updated 7.6 years ago by ★ 1.3k • written 7.6 years ago by ▴ 640
0
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0
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4.4k
views
Comment: C: [STAR] Why are there so many more mapped reads than unmapped reads in my .sam ou
7.6 years ago by Kristin Muench ▴ 640
0
votes
1
reply
4.4k
views
Comment: C: [STAR] Why are there so many more mapped reads than unmapped reads in my .sam ou
7.6 years ago by Kristin Muench ▴ 640
0
votes
1
reply
4.8k
views
Comment: C: Adding plasmid sequences to gtf file
7.6 years ago by Kristin Muench ▴ 640
0
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0
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4.8k
views
Comment: C: Adding plasmid sequences to gtf file
7.6 years ago by Kristin Muench ▴ 640
4
votes
6
replies
4.8k
views
Adding plasmid sequences to gtf file
RNA-Seq
7.6 years ago by Kristin Muench ▴ 640
0
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0
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3.4k
views
Comment: C: How to align .fastq files to an Addgene vector sequence?
7.6 years ago by Kristin Muench ▴ 640
4
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6
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3.4k
views
How to align .fastq files to an Addgene vector sequence?
RNA-Seq alignment
7.6 years ago by Kristin Muench ▴ 640
0
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0
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3.4k
views
Comment: C: How to align .fastq files to an Addgene vector sequence?
7.6 years ago by Kristin Muench ▴ 640
0
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0
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3.4k
views
Comment: C: How to align .fastq files to an Addgene vector sequence?
7.6 years ago by Kristin Muench ▴ 640
0
votes
0
replies
3.6k
views
RNA-Seq Normalization and Batch Correction
RNA-Seq R
8.2 years ago by Kristin Muench ▴ 640
0
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0
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7.0k
views
Comment: C: What the heck is going on with this DESeq2 MA Plot?
8.2 years ago by Kristin Muench ▴ 640
0
votes
6
replies
3.2k
views
Could a "complete" RNA-Seq database feasibly exclude some protein-coding transcripts?
RNA-Seq
updated 3.4 years ago by 45k • written 10.6 years ago by ▴ 640
0
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0
replies
1.7k
views
Is there a way to normalize for input library size/total RNA in microarray?
microarray
8.8 years ago by Kristin Muench ▴ 640
3
votes
2
replies
2.9k
views
Is it possible to compare 3SEQ and RNA-Seq data?
RNA-Seq 3SEQ DE
updated 3.7 years ago by 45k • written 11.1 years ago by ▴ 640
130 results • Page 2 of 3
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