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6
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Forum: sample size, normality assumption, t.test/anova for DEG analysis
statistics t.test anova data-analysis
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 4.8k
1
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1
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3.8k
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Comment: Comment: How to split gene names in my list?
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 4.8k
3
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1
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3.8k
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Answer: Answer: How to split gene names in my list?
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 4.8k
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3.1k
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Comment: Comment: microarray data analysis
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 4.8k
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0
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2.6k
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Comment: Comment: error using bedtools closestbed
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 4.8k
1
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1
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5.3k
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Comment: Comment: Scan a large genome for the ocurrence of a single sequence motif?
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 4.8k
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Answer: Answer: error using bedtools closestbed
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 4.8k
12
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0
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8.5k
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Tutorial: Plot average methylation levels across TSS region
bedtools RRBS R methylation
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 4.8k
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Comment: C: why some ENCODE narrowPeak/broadPeak data have no strand information?
10.6 years ago by TriS ★ 4.8k
6
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2
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3.2k
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why some ENCODE narrowPeak/broadPeak data have no strand information?
ChIP-Seq broadPeak narrowPeak ENCODE
updated 3.5 years ago by 45k • written 10.6 years ago by ★ 4.8k
2
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3
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5.3k
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Answer: Answer: Determining gene expression with 2 biological replicates and RPKM data only
updated 3.5 years ago by 45k • written 10.6 years ago by ★ 4.8k
0
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1
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11k
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Comment: Comment: Problem in identifying model matrix
updated 3.5 years ago by 45k • written 10.6 years ago by ★ 4.8k
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0
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4.2k
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Answer: Answer: how to get microarray data from GEO to analyze in WEKA
updated 3.5 years ago by 45k • written 10.6 years ago by ★ 4.8k
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0
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Comment: C: published array data not replicable with limma analysis
10.6 years ago by TriS ★ 4.8k
3
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7
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8.2k
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limma results topTable vs toptable differ
microarray differential-expression R limma
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 4.8k
4
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7
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4.3k
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published array data not replicable with limma analysis
paired-analysis Microarray R limma
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 4.8k
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0
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2.7k
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Comment: Comment: combine affy HGU95Av2 and HGU133plus2
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 4.8k
0
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1
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2.7k
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Comment: Comment: combine affy HGU95Av2 and HGU133plus2
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 4.8k
1
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4
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2.7k
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combine affy HGU95Av2 and HGU133plus2
microarray normalization R
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 4.8k
2
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0
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19k
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Answer: Answer: Сalculating fold-enrichment of ChIP-seq peaks intersecting with promoters (vs. g
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 4.8k
1
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1
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10k
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Answer: Answer: Why Rstudio doesn't open scripts from projects when they are moved to a new mach
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 4.8k
0
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1
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10k
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Comment: Comment: Why Rstudio doesn't open scripts from projects when they are moved to a new mach
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 4.8k
0
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0
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5.2k
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Answer: Answer: Differentially expressed genes in Microarray data by Wilcoxon-test
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 4.8k
0
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1
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4.7k
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Comment: Comment: Cufflinks: Long time for assembly-"Waiting for 1 thread to complete"
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 4.8k
2
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0
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2.1k
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Answer: Answer: How to predefine Chipseq peak calling peak length in MACS?
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 4.8k
1
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1
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2.7k
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Answer: Answer: Illumina Gene expression array analysis
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 4.8k
1
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1
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4.7k
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Comment: C: Cufflinks: Long time for assembly-"Waiting for 1 thread to complete"
10.7 years ago by TriS ★ 4.8k
0
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0
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4.3k
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Comment: Comment: published array data not replicable with limma analysis
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 4.8k
0
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1
reply
4.3k
views
Comment: C: published array data not replicable with limma analysis
10.7 years ago by TriS ★ 4.8k
0
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2
replies
8.2k
views
Comment: Comment: limma results topTable vs toptable differ
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 4.8k
1
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1
reply
8.2k
views
Answer: Answer: limma results topTable vs toptable differ
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 4.8k
1
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0
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57k
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Comment: Comment: Venn/Euler Diagram Of Four Or More Sets
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 4.8k
0
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0
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2.8k
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Comment: Comment: MACS usage for IgG and treatment
updated 3.5 years ago by 45k • written 10.8 years ago by ★ 4.8k
0
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0
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40k
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Answer: Answer: Survival Analysis Using Tcga Data
updated 3.5 years ago by 45k • written 10.8 years ago by ★ 4.8k
4
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2
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34k
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Comment: Comment: TCGA: Does TCGA cancer studies have mRNA expression data for Control/Normal samp
updated 4.4 years ago by 45k • written 11.1 years ago by ★ 4.8k
335 results • Page 7 of 7
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