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4
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2
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4.0k
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Pruning a dense SNP dataset without losing too much LD
plink
updated 21 months ago by 43k • written 9.0 years ago by ▴ 60
0
votes
0
replies
4.0k
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Comment: C: converting very small p-values into chi-squared statistics with python
6.8 years ago by yorgos.athanasiadis ▴ 60
3
votes
4
replies
4.0k
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converting very small p-values into chi-squared statistics with python
python chi-squared p-value upper tail gwas
6.8 years ago by yorgos.athanasiadis ▴ 60
2
votes
0
replies
4.0k
views
Answer: A: converting very small p-values into chi-squared statistics with python
6.8 years ago by yorgos.athanasiadis ▴ 60
0
votes
1
reply
1.4k
views
GeneticsBase for 3.1.1
GeneticsBase R Bioconductor
updated 7.8 years ago by 20 • written 9.1 years ago by ▴ 60
0
votes
0
replies
1.9k
views
PSMC: create pseudo-diploid male X chromosomes from different species
PSMC X chromosome fastq
8.3 years ago by yorgos.athanasiadis ▴ 60
2
votes
1
reply
4.2k
views
Changing the order of ref/alt alleles in a phased vcf file
strand-flip plink vcftools
updated 15 months ago by 43k • written 8.9 years ago by ▴ 60
0
votes
1
reply
3.1k
views
Comment: C: Convert from oxford to plink format with no missing genotypes
9.0 years ago by yorgos.athanasiadis ▴ 60
1
vote
3
replies
3.1k
views
Convert from oxford to plink format with no missing genotypes
plink impute2 chromopainter
updated 22 months ago by 43k • written 9.0 years ago by ▴ 60
0
votes
0
replies
4.1k
views
Comment: Comment: How to bypass SNPs with identical A1 and A2 alleles in PLINK?
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 60
1
vote
1
reply
4.1k
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Comment: Comment: How to bypass SNPs with identical A1 and A2 alleles in PLINK?
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 60
1
vote
6
replies
4.1k
views
How to bypass SNPs with identical A1 and A2 alleles in PLINK?
plink imputation merge shapeit impute2
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 60
0
votes
1
reply
4.1k
views
Answer: Answer: How to bypass SNPs with identical A1 and A2 alleles in PLINK?
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 60
0
votes
0
replies
7.3k
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Comment: Comment: PLINK returns NA values for all minor allele frequencies in my data
updated 2.2 years ago by 43k • written 9.6 years ago by ▴ 60
3
votes
6
replies
3.8k
views
create plink files from 23andMe JSON files
plink JSON SNP 23andMe
updated 2.2 years ago by 43k • written 9.6 years ago by ▴ 60
0
votes
0
replies
3.8k
views
Comment: Comment: create plink files from 23andMe JSON files
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 60
0
votes
0
replies
7.3k
views
Comment: Comment: PLINK returns NA values for all minor allele frequencies in my data
updated 2.2 years ago by 43k • written 9.6 years ago by ▴ 60
0
votes
2
replies
7.3k
views
Comment: C: PLINK returns NA values for all minor allele frequencies in my data
9.6 years ago by yorgos.athanasiadis ▴ 60
0
votes
1
reply
3.8k
views
Comment: Comment: create plink files from 23andMe JSON files
updated 2.2 years ago by 43k • written 9.6 years ago by ▴ 60
2
votes
6
replies
7.3k
views
PLINK returns NA values for all minor allele frequencies in my data
freq plink maf SNP
updated 2.2 years ago by 43k • written 9.6 years ago by ▴ 60
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