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970
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Comment: C: How to correctly assign the matrix row for DGE analysis?
5.2 years ago by Gordon Smyth ★ 8.3k
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0
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1.3k
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Comment: C: why DiffBind, diffferentially binding site is the for different samples
5.2 years ago by Gordon Smyth ★ 8.3k
2
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0
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5.4k
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Answer: A: How to do DMR analysis with BiSeq (for RRBS methylation data)?
5.2 years ago by Gordon Smyth ★ 8.3k
0
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1
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2.2k
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Answer: A: GSEA Positional Gene sets for mouse chromosomes
5.2 years ago by Gordon Smyth ★ 8.3k
1
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0
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9.2k
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Answer: A: Where can I find mouse Gene MatriX file format (GMT)?
5.2 years ago by Gordon Smyth ★ 8.3k
3
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1
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8.0k
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Answer: Answer: GSEA with mouse RNAseq data
4.3 years ago by Gordon Smyth ★ 8.3k
5
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2
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20k
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Answer: A: GSEA analysis with Mouse (Please give some comments..)
5.2 years ago by Gordon Smyth ★ 8.3k
0
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0
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20k
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Comment: C: GSEA analysis with Mouse (Please give some comments..)
5.2 years ago by Gordon Smyth ★ 8.3k
1
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3
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20k
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Comment: C: GSEA analysis with Mouse (Please give some comments..)
5.2 years ago by Gordon Smyth ★ 8.3k
1
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1
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24k
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Comment: C: Performing GSEA using MSigDB gene sets in R
5.2 years ago by Gordon Smyth ★ 8.3k
0
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0
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24k
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Comment: C: Performing GSEA using MSigDB gene sets in R
5.2 years ago by Gordon Smyth ★ 8.3k
0
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1
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2.2k
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Comment: C: GSEA Positional Gene sets for mouse chromosomes
5.2 years ago by Gordon Smyth ★ 8.3k
0
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0
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3.4k
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Answer: A: How to create "design" for RNA-seq experiment using limma?
5.2 years ago by Gordon Smyth ★ 8.3k
0
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0
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1.4k
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Answer: A: nearestTSS function in edgeR for differential methylation analysis
5.3 years ago by Gordon Smyth ★ 8.3k
0
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1
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8.4k
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Comment: C: Is plotMDS (from limma package) a PCA (Principal Component Analysis) or a PCoA (
5.3 years ago by Gordon Smyth ★ 8.3k
0
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1
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5.1k
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Comment: C: Can one plot % of variance using the plotMDS function?
5.3 years ago by Gordon Smyth ★ 8.3k
0
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1
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8.4k
views
Comment: C: Is plotMDS (from limma package) a PCA (Principal Component Analysis) or a PCoA (
5.3 years ago by Gordon Smyth ★ 8.3k
3
votes
2
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5.1k
views
Answer: Answer: Can one plot % of variance using the plotMDS function?
4.2 years ago by Gordon Smyth ★ 8.3k
1
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1
reply
8.4k
views
Answer: A: Is plotMDS (from limma package) a PCA (Principal Component Analysis) or a PCoA (
5.3 years ago by Gordon Smyth ★ 8.3k
0
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1
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5.1k
views
Comment: C: Can one plot % of variance using the plotMDS function?
5.3 years ago by Gordon Smyth ★ 8.3k
0
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1
reply
3.9k
views
Comment: C: The results (logFC) are not consistence (edgeR packages)
5.3 years ago by Gordon Smyth ★ 8.3k
0
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1
reply
3.9k
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Comment: C: The results (logFC) are not consistence (edgeR packages)
5.3 years ago by Gordon Smyth ★ 8.3k
3
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1
reply
3.9k
views
Answer: A: The results (logFC) are not consistence (edgeR packages)
5.3 years ago by Gordon Smyth ★ 8.3k
0
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0
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3.9k
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Comment: C: The results (logFC) are not consistence (edgeR packages)
5.3 years ago by Gordon Smyth ★ 8.3k
1
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1
reply
9.4k
views
Answer: A: Why 'filterByExpr' does not eliminate low read counts from the expression data?
5.3 years ago by Gordon Smyth ★ 8.3k
4
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1
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5.3k
views
Comment: C: Trying to understand the maths behind one Limma function
5.4 years ago by Gordon Smyth ★ 8.3k
1
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0
replies
5.0k
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Comment: C: DEG analysis between 2 samples using edger
5.4 years ago by Gordon Smyth ★ 8.3k
3
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1
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5.0k
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Answer: A: DEG analysis between 2 samples using edger
5.4 years ago by Gordon Smyth ★ 8.3k
0
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0
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7.6k
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Comment: C: GO enrichment analysis graphs after goseq: any easy solutions?
5.4 years ago by Gordon Smyth ★ 8.3k
21
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1
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16k
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Answer: A: How to get read counts on transcript level using featurecounts?
5.6 years ago by Gordon Smyth ★ 8.3k
3
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1
reply
2.5k
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Answer: A: Normalizing genes between arrays with Limma
5.6 years ago by Gordon Smyth ★ 8.3k
0
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0
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3.6k
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Comment: C: differential gene expression analysis
5.6 years ago by Gordon Smyth ★ 8.3k
1
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0
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3.6k
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Comment: C: differential gene expression analysis
5.6 years ago by Gordon Smyth ★ 8.3k
1
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0
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2.1k
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Answer: A: RNA-seq differential analysis with N batches and a technical replicate in each b
5.6 years ago by Gordon Smyth ★ 8.3k
0
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0
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2.1k
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Comment: C: RNA-seq differential analysis with N batches and a technical replicate in each b
5.6 years ago by Gordon Smyth ★ 8.3k
1
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0
replies
2.8k
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Answer: A: The error generated by Rsamtools
5.6 years ago by Gordon Smyth ★ 8.3k
0
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0
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3.5k
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Comment: C: What Does Requirebothendsmapped From Rsubread Package Means?
5.6 years ago by Gordon Smyth ★ 8.3k
2
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1
reply
5.0k
views
Answer: A: RNA Seq data with GSEA
5.6 years ago by Gordon Smyth ★ 8.3k
2
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0
replies
1.6k
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Answer: A: featurecounts output changes the underscores in the sample name into dots
5.6 years ago by Gordon Smyth ★ 8.3k
1
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0
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6.0k
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Comment: C: limma voom problem
5.6 years ago by Gordon Smyth ★ 8.3k
0
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1
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6.0k
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Comment: C: limma voom problem
5.6 years ago by Gordon Smyth ★ 8.3k
4
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1
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6.0k
views
Answer: A: limma voom problem
5.6 years ago by Gordon Smyth ★ 8.3k
0
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0
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3.0k
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Answer: A: Design matrix for voom: with or without batch blocking?
5.7 years ago by Gordon Smyth ★ 8.3k
0
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1
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3.5k
views
Comment: C: How to interpret the differences of read counts using htseq and feature counts?
5.7 years ago by Gordon Smyth ★ 8.3k
0
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0
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2.7k
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Comment: C: How to correctly correct for batch effects
5.7 years ago by Gordon Smyth ★ 8.3k
1
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0
replies
1.4k
views
Job: Postdoc in Statistical Bioinformatics and Proteomics, WEHI Australia
proteomics statistics
updated 2.3 years ago by 45k • written 5.8 years ago by ★ 8.3k
1
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0
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4.1k
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Answer: A: how to use idat file for analyses in bioconductor
5.7 years ago by Gordon Smyth ★ 8.3k
0
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0
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5.9k
views
Answer: A: Script for analyzing idat (illumina) microarray files with limma, any suggestion
5.7 years ago by Gordon Smyth ★ 8.3k
3
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0
replies
1.4k
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Answer: A: Error in inputting multiple illumina microarray idat files to limma
5.7 years ago by Gordon Smyth ★ 8.3k
0
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0
replies
3.4k
views
Comment: C: EdgeR analysis for DE genes with different time courses
5.7 years ago by Gordon Smyth ★ 8.3k
577 results • Page 10 of 12
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