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Is anyone aware of a function that will create a MultiAssayExperiment() based on the structure of flat files?
processing File MultiAssayExperiment Automation
11 months ago by LauferVA 4.2k
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Comment: Comment: How to create a website using Python
11 months ago by LauferVA 4.2k
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Answer: Answer: Comparing P-Values & FDR adjusted p-values between RNA-Seq experiments?
11 months ago by LauferVA 4.2k
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Comment: Comment: Two spatial transcriptomics datasets from same patient
11 months ago by LauferVA 4.2k
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Comment: Comment: Strange clustering of genes with circlize
11 months ago by LauferVA 4.2k
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749
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Comment: Comment: Mapping transcript location issue.
11 months ago by LauferVA 4.2k
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Comment: Comment: Batch correction for Nanopore RNAseq
11 months ago by LauferVA 4.2k
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808
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Comment: Comment: Parallel GWAS?
11 months ago by LauferVA 4.2k
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Comment: Comment: Should and can we use the new draft pangenome reference?
11 months ago by LauferVA 4.2k
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Comment: Comment: Should and can we use the new draft pangenome reference?
11 months ago by LauferVA 4.2k
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Comment: Comment: Clinical significance annotation for Non-coding and Fusion variants
11 months ago by LauferVA 4.2k
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1.8k
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Answer: Answer: Should and can we use the new draft pangenome reference?
11 months ago by LauferVA 4.2k
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Answer: Answer: Should primary tumor RNA-Seq match their derived cell lines and PDXs? And which
11 months ago by LauferVA 4.2k
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1.8k
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Comment: Comment: bar chart to show a p value of 0
11 months ago by LauferVA 4.2k
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663
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Answer: Answer: GSEA vs Functional Annotation
11 months ago by LauferVA 4.2k
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1.8k
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Comment: Comment: bar chart to show a p value of 0
11 months ago by LauferVA 4.2k
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1.1k
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Answer: Answer: Large-scale bulk RNAseq Experiment with abnormal MA-plots for apoptotic conditio
11 months ago by LauferVA 4.2k
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Answer: Answer: allele frequency in VCF
11 months ago by LauferVA 4.2k
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1.2k
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Comment: Comment: Very different QUAL scores on VCFs of same sample using different methods
11 months ago by LauferVA 4.2k
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Comment: Comment: Very different QUAL scores on VCFs of same sample using different methods
11 months ago by LauferVA 4.2k
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1.2k
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Answer: Answer: clusterProfiler
11 months ago by LauferVA 4.2k
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523
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Answer: Answer: including incomplete data set in the PCA & gene expression analysis
11 months ago by LauferVA 4.2k
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520
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Answer: Answer: Should genotype PCA in eQTL analysis be performed using all SNPs? or can be with
11 months ago by LauferVA 4.2k
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Comment: Comment: VEP: Generation of polyphen2 & SFT scores for structural variants.
11 months ago by LauferVA 4.2k
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Answer: Answer: Seurat: Log fold change and p value when control expression is 0
11 months ago by LauferVA 4.2k
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707
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Answer: Answer: VEP: Generation of polyphen2 & SFT scores for structural variants.
11 months ago by LauferVA 4.2k
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1.2k
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Comment: Comment: Very different QUAL scores on VCFs of same sample using different methods
11 months ago by LauferVA 4.2k
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1
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1.4k
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Answer: Answer: Batch correction for Nanopore RNAseq
12 months ago by LauferVA 4.2k
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1.4k
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Answer: Answer: differential splicing between two groups for 5 genes
11 months ago by LauferVA 4.2k
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749
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Comment: Comment: Mapping transcript location issue.
12 months ago by LauferVA 4.2k
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1.1k
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Comment: Comment: Obtain genomic coordinates of all occurrences of a small sequence (i.e: TCTTCTC)
12 months ago by LauferVA 4.2k
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646
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Answer: Answer: GSEA and GO Ontology
12 months ago by LauferVA 4.2k
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2.2k
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Comment: Comment: Pan genome based assembly
12 months ago by LauferVA 4.2k
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594
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Answer: Answer: Logistic Regression In R including related individuals
12 months ago by LauferVA 4.2k
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614
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Answer: Answer: Dataset with mRNA and Vitamin D signature
12 months ago by LauferVA 4.2k
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906
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Comment: Comment: Tools for sentiment analysis that have been vetted on pubmed abstracts
12 months ago by LauferVA 4.2k
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2
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906
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Tools for sentiment analysis that have been vetted on pubmed abstracts
sentiment-analysis pubmed Python R
updated 12 months ago by 44k • written 12 months ago by 4.2k
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Comment: Comment: PyWGCNA
12 months ago by LauferVA 4.2k
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2.1k
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Comment: Comment: DESeq2 Normalization and Pre-Filtering
12 months ago by LauferVA 4.2k
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2.1k
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Answer: Answer: DESeq2 Normalization and Pre-Filtering
12 months ago by LauferVA 4.2k
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2.1k
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Comment: Comment: Get relationships and hierarchies for GO terms
12 months ago by LauferVA 4.2k
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2.1k
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Comment: Comment: Get relationships and hierarchies for GO terms
12 months ago by LauferVA 4.2k
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907
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Comment: Comment: Experiment Generator
12 months ago by LauferVA 4.2k
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907
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Comment: Comment: Experiment Generator
12 months ago by LauferVA 4.2k
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Comment: Comment: Advantages of install.packages() versus BiocManager::install()
12 months ago by LauferVA 4.2k
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Comment: Comment: Advantages of install.packages() versus BiocManager::install()
12 months ago by LauferVA 4.2k
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6 follow
Advantages of install.packages() versus BiocManager::install()
R bioconductor
11 months ago by LauferVA 4.2k
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2.2k
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Comment: Comment: PyWGCNA
12 months ago by LauferVA 4.2k
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2.5k
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Answer: Answer: How do I correctly format my limma/eBayes code?
12 months ago by LauferVA 4.2k
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23
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4.5k
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8 follow
Forum: Is there a file format better suited for the era of pangenomics than the .vcf? What are its attributes?
VCF file-format genomics
updated 12 months ago by 22k • written 12 months ago by 4.2k
751 results • Page 5 of 16
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