Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : answers
1
vote
0
replies
518
views
Answer: Answer: Reasonable number of mutations in a human cancer cell exome
2.0 years ago by LauferVA 4.2k
0
votes
0
replies
605
views
Answer: Answer: 3 group differential gene analysis
2.1 years ago by LauferVA 4.2k
1
vote
2
replies
1.2k
views
Answer: Answer: Why my `Percent duplicates` in a shallow sequencing is too high?
2.2 years ago by LauferVA 4.2k
0
votes
1
reply
761
views
Answer: Answer: low counts in DESeq2
2.2 years ago by LauferVA 4.2k
1
vote
1
reply
823
views
Answer: Answer: Genetic Model when running PCA
2.2 years ago by LauferVA 4.2k
2
votes
1
reply
2.3k
views
Answer: Answer: WGCNA HeatMap correlating modules and sample conditions
2.2 years ago by LauferVA 4.2k
1
vote
0
replies
627
views
Answer: Answer: Checking chromosome builds for genotyping data
2.2 years ago by LauferVA 4.2k
0
votes
0
replies
453
views
Answer: Answer: plink
2.2 years ago by LauferVA 4.2k
0
votes
0
replies
452
views
Answer: Answer: Sharing interactive Cytoscape networks
2.2 years ago by LauferVA 4.2k
2
votes
0
replies
871
views
Answer: Answer: Alternatives to TMM normalization
2.2 years ago by LauferVA 4.2k
0
votes
0
replies
497
views
Answer: Answer: Batch effect
2.2 years ago by LauferVA 4.2k
0
votes
0
replies
581
views
Answer: Answer: Info/r2 threshold to use for LD file for FINEMAP/SUSIE
2.2 years ago by LauferVA 4.2k
3
votes
1
reply
1.7k
views
Answer: Answer: How to do pathway enrichment analysis with genomic ranges data (ATAC-Seq peaks)?
2.2 years ago by LauferVA 4.2k
1
vote
0
replies
1.3k
views
Answer: Answer: Weird QQ plot in GWAS analysis
2.2 years ago by LauferVA 4.2k
0
votes
0
replies
525
views
Answer: Answer: Can a heterogenous approach to data normalization yield a better consensus learn
2.3 years ago by LauferVA 4.2k
0
votes
0
replies
1.3k
views
Answer: Answer: Batch effect correction for bulk RNA-seq
2.3 years ago by LauferVA 4.2k
0
votes
1
reply
1.7k
views
Answer: Answer: Re-assembly assembled genomes
2.3 years ago by LauferVA 4.2k
0
votes
0
replies
656
views
Answer: Answer: DESEQ for Differential Expression
2.3 years ago by LauferVA 4.2k
3
votes
1
reply
2.6k
views
Answer: Answer: How to calculate the absolute p-value for GSEA which returned 0.0 as the p-value
2.3 years ago by LauferVA 4.2k
6
votes
0
replies
1.4k
views
Answer: Answer: Are the upregulated genes in one comparison the downregulated genes in the inver
2.3 years ago by LauferVA 4.2k
0
votes
1
reply
1.2k
views
Answer: Answer: How can I extract part of the DNA sequences that align to a specific region in t
2.3 years ago by LauferVA 4.2k
0
votes
0
replies
645
views
Answer: Answer: 4C packages
2.3 years ago by LauferVA 4.2k
2
votes
1
reply
1.9k
views
Answer: Answer: bioinformatics pipelines on GCP or AWS
2.1 years ago by LauferVA 4.2k
3
votes
1
reply
1.6k
views
Answer: Answer: DESeq2 normalization
2.3 years ago by LauferVA 4.2k
1
vote
1
reply
3.3k
views
Answer: Answer: Volcano plot
2.4 years ago by LauferVA 4.2k
2
votes
1
reply
763
views
Answer: Answer: CNV and frameshift change
2.4 years ago by LauferVA 4.2k
0
votes
1
reply
2.3k
views
Answer: Answer: Problem getting soft threshold power using WGCNA for RNA-seq data
2.5 years ago by LauferVA 4.2k
0
votes
1
reply
989
views
Answer: Answer: Assessing how similar/ different of activated pathways between multiple groups o
2.8 years ago by LauferVA 4.2k
1
vote
0
replies
1.1k
views
Answer: Answer: Variant Calling Heterozygous Reference Alleles
2.8 years ago by LauferVA 4.2k
1
vote
1
reply
4.2k
views
Answer: Answer: weird MAplot or volcano plot of DESeq2 diff result
2.8 years ago by LauferVA 4.2k
1
vote
1
reply
1.2k
views
Answer: Answer: Advice on organizing large GSVA heatmap
2.8 years ago by LauferVA 4.2k
5
votes
1
reply
1.1k
views
Answer: Answer: proportion of variance
2.8 years ago by LauferVA 4.2k
0
votes
1
reply
1.3k
views
Answer: Answer: is local ancestry inference typically always run w/ array genotypes instead of
2.8 years ago by LauferVA 4.2k
3
votes
1
reply
1.1k
views
Answer: Answer: population stratification for candidate gene association study
2.9 years ago by LauferVA 4.2k
2
votes
0
replies
763
views
Answer: Answer: Genotype imputation - do SNP IDs of input files and reference panels matter?
2.9 years ago by LauferVA 4.2k
2
votes
1
reply
1.2k
views
Answer: Answer: IMPUTE2 minimal number of SNPs per chunk
2.9 years ago by LauferVA 4.2k
0
votes
0
replies
620
views
Answer: Answer: IMPUTE2 limit to only one population of 1000G Reference
2.9 years ago by LauferVA 4.2k
1
vote
1
reply
1.9k
views
Answer: Answer: Visualizing the gene network obtained by WGCNA
2.9 years ago by LauferVA 4.2k
6
votes
0
replies
3.5k
views
Answer: A: GWAS data from an Illumina Omni express Array and Illumina 660 W Quad Array
updated 4.3 years ago by 43k • written 8.3 years ago by 4.2k
2
votes
0
replies
2.8k
views
Answer: A: Principal component analyses
updated 4.5 years ago by 43k • written 8.7 years ago by 4.2k
3
votes
0
replies
5.9k
views
Answer: A: Delete Text between two strings sed, awk
updated 4.5 years ago by 43k • written 8.8 years ago by 4.2k
1
vote
1
reply
1.8k
views
Answer: A: Conditional motif enrichment in sequence and selex data
updated 4.5 years ago by 43k • written 8.8 years ago by 4.2k
3
votes
1
reply
4.1k
views
Answer: A: Whole exome sequencing data, rare variants and QQ-plots
updated 5.6 years ago by 11k • written 8.0 years ago by 4.2k
2
votes
1
reply
4.1k
views
Answer: C: Whole exome sequencing data, rare variants and QQ-plots
updated 5.6 years ago by 11k • written 8.0 years ago by 4.2k
2
votes
0
replies
4.1k
views
Answer: A: Should I include multi-mapped reads for analysis that does not require significa
5.8 years ago by LauferVA 4.2k
0
votes
0
replies
1.4k
views
Answer: A: SNP tools to infer copy number variations (CNVs)
7.0 years ago by LauferVA 4.2k
4
votes
1
reply
2.5k
views
Answer: A: Identify recessive conditions from VCF files
7.0 years ago by LauferVA 4.2k
2
votes
1
reply
3.9k
views
Answer: A: Is it more correct to use r2 or D' for selecting SNPs in LD?
7.0 years ago by LauferVA 4.2k
1
vote
0
replies
2.2k
views
Answer: A: Limiting variants from WGS to GWAS regions to get more significant cis/trans eQT
7.0 years ago by LauferVA 4.2k
5
votes
0
replies
5.2k
views
Answer: A: errors in running smartpca
7.2 years ago by LauferVA 4.2k
168 results • Page 3 of 4
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6