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240
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Understanding Tumor Contamination vs. Cellularity
Cancer purity cnv
9 weeks ago by George ▴ 10
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0
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206
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Best Practices for Tumor-Only WES Data Analysis: Seeking Feedback on Variant Calling Pipeline
GATK Mutect WES Cancer
9 weeks ago by George ▴ 10
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0
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198
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Recommended Tool for Somatic SV Discovery in Tumor-Only WES Data
SV WES tumor-only
11 weeks ago by George ▴ 10
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0
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272
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Comment: Comment: Do I Need to Filter Indels Before Annotation in GATK Funcotator?
3 months ago by George ▴ 10
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2
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272
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Do I Need to Filter Indels Before Annotation in GATK Funcotator?
GATK Annotation Funcotator
3 months ago by George ▴ 10
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382
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Comment: Comment: Can I Use SureSelect v7 on Exome Data Captured with SureSelect v6?
3 months ago by George ▴ 10
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2
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382
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Can I Use SureSelect v7 on Exome Data Captured with SureSelect v6?
SureSelect hg38 WES SV
3 months ago by George ▴ 10
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398
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Comment: Comment: Clarification on Reference Version in GATK Resource Bundle
4 months ago by George ▴ 10
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2
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398
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Clarification on Reference Version in GATK Resource Bundle
GATK hg38 Resource Bundle
4 months ago by George ▴ 10
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0
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299
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Comment: Comment: Seeking Opinions on Pipeline for Detecting Somatic Variants and Rare Germline Mu
4 months ago by George ▴ 10
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2
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299
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Seeking Opinions on Pipeline for Detecting Somatic Variants and Rare Germline Mutations
snps germline somatic gatk
4 months ago by George ▴ 10
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551
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Comment: Comment: Seeking Advice on Multisample Variant Calling Pipeline with BWA-MEME and GATK DR
4 months ago by George ▴ 10
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0
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551
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Comment: Comment: Seeking Advice on Multisample Variant Calling Pipeline with BWA-MEME and GATK DR
4 months ago by George ▴ 10
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4
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551
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Seeking Advice on Multisample Variant Calling Pipeline with BWA-MEME and GATK DRAGEN Mode
GATK Variant-Calling dragen bwa
4 months ago by George ▴ 10
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1.0k
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Comment: Comment: Discrepancies in Sequence Length Distribution Between Trim Galore and Trimmomati
4 months ago by George ▴ 10
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1
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1.0k
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Comment: Comment: Discrepancies in Sequence Length Distribution Between Trim Galore and Trimmomati
4 months ago by George ▴ 10
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1
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1.0k
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Comment: Comment: Discrepancies in Sequence Length Distribution Between Trim Galore and Trimmomati
4 months ago by George ▴ 10
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6
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1.0k
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Discrepancies in Sequence Length Distribution Between Trim Galore and Trimmomatic During Adapter Trimming
fastqc TrimGalore multiqc Trimmomatic
4 months ago by George ▴ 10
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1
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491
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Inconsistency in SNP detection pipelines for multi-sample analysis
vcf bam bcf snps
updated 7 months ago by 4.6k • written 7 months ago by ▴ 10
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1.5k
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Comment: Comment: Issue with Merging BCF Files: Invalid INFO id Error
12 months ago by George ▴ 10
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1
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1.5k
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Comment: Comment: Issue with Merging BCF Files: Invalid INFO id Error
12 months ago by George ▴ 10
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1
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1.5k
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Comment: Comment: Issue with Merging BCF Files: Invalid INFO id Error
12 months ago by George ▴ 10
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1
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1.5k
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Comment: Comment: Issue with Merging BCF Files: Invalid INFO id Error
12 months ago by George ▴ 10
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7
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1.5k
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Issue with Merging BCF Files: Invalid INFO id Error
bcftools
updated 12 months ago by 44k • written 12 months ago by ▴ 10
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1.0k
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Comment: Comment: Efficient Bulk Data Retrieval from NCBI BioProject
12 months ago by George ▴ 10
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1
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1.0k
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Comment: Comment: Efficient Bulk Data Retrieval from NCBI BioProject
12 months ago by George ▴ 10
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4
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1.0k
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Efficient Bulk Data Retrieval from NCBI BioProject
ncbi SRAtoolkit prefetch
12 months ago by George ▴ 10
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0
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908
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Comment: Comment: SNP calling with many samples using bcftools
12 months ago by George ▴ 10
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0
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908
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Comment: Comment: SNP calling with many samples using bcftools
12 months ago by George ▴ 10
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1
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908
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Comment: Comment: SNP calling with many samples using bcftools
12 months ago by George ▴ 10
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1
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908
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Comment: Comment: SNP calling with many samples using bcftools
12 months ago by George ▴ 10
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7
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908
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SNP calling with many samples using bcftools
bcftools SNP multithreading
12 months ago by George ▴ 10
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