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517
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Understanding Tumor Contamination vs. Cellularity
Cancer purity cnv
13 months ago by George ▴ 20
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0
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540
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Best Practices for Tumor-Only WES Data Analysis: Seeking Feedback on Variant Calling Pipeline
GATK Mutect WES Cancer
13 months ago by George ▴ 20
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0
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462
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Recommended Tool for Somatic SV Discovery in Tumor-Only WES Data
SV WES tumor-only
13 months ago by George ▴ 20
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0
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748
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Comment: Comment: Do I Need to Filter Indels Before Annotation in GATK Funcotator?
14 months ago by George ▴ 20
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2
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748
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Do I Need to Filter Indels Before Annotation in GATK Funcotator?
GATK Annotation Funcotator
14 months ago by George ▴ 20
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1.0k
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Comment: Comment: Can I Use SureSelect v7 on Exome Data Captured with SureSelect v6?
14 months ago by George ▴ 20
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2
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1.0k
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Can I Use SureSelect v7 on Exome Data Captured with SureSelect v6?
SureSelect hg38 WES SV
14 months ago by George ▴ 20
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1.4k
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Comment: Comment: Clarification on Reference Version in GATK Resource Bundle
15 months ago by George ▴ 20
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2
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1.4k
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Clarification on Reference Version in GATK Resource Bundle
GATK hg38 Resource Bundle
15 months ago by George ▴ 20
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0
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665
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Comment: Comment: Seeking Opinions on Pipeline for Detecting Somatic Variants and Rare Germline Mu
15 months ago by George ▴ 20
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2
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665
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Seeking Opinions on Pipeline for Detecting Somatic Variants and Rare Germline Mutations
snps germline somatic gatk
15 months ago by George ▴ 20
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1.6k
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Comment: Comment: Seeking Advice on Multisample Variant Calling Pipeline with BWA-MEME and GATK DR
15 months ago by George ▴ 20
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0
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1.6k
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Comment: Comment: Seeking Advice on Multisample Variant Calling Pipeline with BWA-MEME and GATK DR
15 months ago by George ▴ 20
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4
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1.6k
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Seeking Advice on Multisample Variant Calling Pipeline with BWA-MEME and GATK DRAGEN Mode
GATK Variant-Calling dragen bwa
15 months ago by George ▴ 20
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2.0k
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Comment: Comment: Discrepancies in Sequence Length Distribution Between Trim Galore and Trimmomati
15 months ago by George ▴ 20
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1
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2.0k
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Comment: Comment: Discrepancies in Sequence Length Distribution Between Trim Galore and Trimmomati
16 months ago by George ▴ 20
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1
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2.0k
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Comment: Comment: Discrepancies in Sequence Length Distribution Between Trim Galore and Trimmomati
16 months ago by George ▴ 20
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6
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2.0k
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Discrepancies in Sequence Length Distribution Between Trim Galore and Trimmomatic During Adapter Trimming
fastqc TrimGalore multiqc Trimmomatic
15 months ago by George ▴ 20
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1
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881
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Inconsistency in SNP detection pipelines for multi-sample analysis
vcf bam bcf snps
updated 18 months ago by 5.1k • written 18 months ago by ▴ 20
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2.4k
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Comment: Comment: Issue with Merging BCF Files: Invalid INFO id Error
23 months ago by George ▴ 20
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1
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2.4k
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Comment: Comment: Issue with Merging BCF Files: Invalid INFO id Error
23 months ago by George ▴ 20
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1
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2.4k
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Comment: Comment: Issue with Merging BCF Files: Invalid INFO id Error
23 months ago by George ▴ 20
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1
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2.4k
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Comment: Comment: Issue with Merging BCF Files: Invalid INFO id Error
23 months ago by George ▴ 20
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7
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2.4k
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Issue with Merging BCF Files: Invalid INFO id Error
bcftools
updated 23 months ago by 45k • written 23 months ago by ▴ 20
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0
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1.6k
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Comment: Comment: Efficient Bulk Data Retrieval from NCBI BioProject
23 months ago by George ▴ 20
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1
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1.6k
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Comment: Comment: Efficient Bulk Data Retrieval from NCBI BioProject
23 months ago by George ▴ 20
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4
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1.6k
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Efficient Bulk Data Retrieval from NCBI BioProject
ncbi SRAtoolkit prefetch
23 months ago by George ▴ 20
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0
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1.8k
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Comment: Comment: SNP calling with many samples using bcftools
23 months ago by George ▴ 20
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0
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1.8k
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Comment: Comment: SNP calling with many samples using bcftools
23 months ago by George ▴ 20
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1
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1.8k
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Comment: Comment: SNP calling with many samples using bcftools
23 months ago by George ▴ 20
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1
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1.8k
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Comment: Comment: SNP calling with many samples using bcftools
23 months ago by George ▴ 20
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7
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1.8k
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SNP calling with many samples using bcftools
bcftools SNP multithreading
23 months ago by George ▴ 20
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