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5
votes
6
replies
791
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SNP annotation tool options (alternatives to ANNOVAR)
annotation ANNOVAR
updated 15 days ago by ▴ 40 • written 17 days ago by ▴ 60
0
votes
1
reply
791
views
Comment: Comment: SNP annotation tool options (alternatives to ANNOVAR)
updated 16 days ago by 154k • written 17 days ago by ▴ 60
0
votes
1
reply
791
views
Comment: Comment: SNP annotation tool options (alternatives to ANNOVAR)
17 days ago by shpak.max ▴ 60
0
votes
0
replies
1.3k
views
Comment: Comment: Alternatives to UCSC genome browser for obtaining gene coordinates
7 months ago by shpak.max ▴ 60
8
votes
5
replies
1.3k
views
Alternatives to UCSC genome browser for obtaining gene coordinates
browser ucsc
7 months ago by shpak.max ▴ 60
0
votes
0
replies
1.3k
views
Comment: Comment: Alternatives to UCSC genome browser for obtaining gene coordinates
7 months ago by shpak.max ▴ 60
0
votes
1
reply
1.2k
views
Comment: Comment: Identify and count gaps in sam/bam files
16 months ago by shpak.max ▴ 60
0
votes
4
replies
1.2k
views
Identify and count gaps in sam/bam files
samtools
updated 16 months ago by ★ 1.7k • written 16 months ago by ▴ 60
0
votes
0
replies
791
views
Comment: Comment: Correcting a lack of gaps in bwa aln mapping of unpaired reads
16 months ago by shpak.max ▴ 60
0
votes
2
replies
791
views
Correcting a lack of gaps in bwa aln mapping of unpaired reads
bwa
16 months ago by shpak.max ▴ 60
0
votes
1
reply
850
views
Comment: Comment: Mismatch between number of reads in fastq and mapped reads
17 months ago by shpak.max ▴ 60
1
vote
3
replies
850
views
Mismatch between number of reads in fastq and mapped reads
samtools bam
updated 17 months ago by ▴ 640 • written 17 months ago by ▴ 60
0
votes
0
replies
1.1k
views
Comment: Comment: Fewer sites in vcf than in reference genome despite Emit_All_Sites argument
18 months ago by shpak.max ▴ 60
0
votes
1
reply
1.1k
views
Comment: Comment: Fewer sites in vcf than in reference genome despite Emit_All_Sites argument
18 months ago by shpak.max ▴ 60
0
votes
4
replies
1.1k
views
Fewer sites in vcf than in reference genome despite Emit_All_Sites argument
GATK UnifiedGenotyper
18 months ago by shpak.max ▴ 60
0
votes
0
replies
993
views
Comment: Comment: Genotyping sites with N in reference genome
18 months ago by shpak.max ▴ 60
0
votes
0
replies
993
views
Comment: Comment: Genotyping sites with N in reference genome
18 months ago by shpak.max ▴ 60
1
vote
4
replies
993
views
Genotyping sites with N in reference genome
GATK UnifiedGenotyper
18 months ago by shpak.max ▴ 60
0
votes
1
reply
1.3k
views
Comment: Comment: Best way to deal with overlapping read names in merged BAM files
19 months ago by shpak.max ▴ 60
0
votes
1
reply
1.3k
views
Comment: Comment: Best way to deal with overlapping read names in merged BAM files
19 months ago by shpak.max ▴ 60
1
vote
5
replies
1.3k
views
Best way to deal with overlapping read names in merged BAM files
picard MarkDuplicates
19 months ago by shpak.max ▴ 60
0
votes
1
reply
1.1k
views
Comment: Comment: Multiple iterations of sorted bam output files with picard SortSam
19 months ago by shpak.max ▴ 60
0
votes
3
replies
1.1k
views
Multiple iterations of sorted bam output files with picard SortSam
picard
updated 19 months ago by 154k • written 19 months ago by ▴ 60
0
votes
0
replies
1.7k
views
Comment: Comment: java version compatible with GATK 3.2.2
20 months ago by shpak.max ▴ 60
0
votes
1
reply
1.7k
views
Comment: Comment: java version compatible with GATK 3.2.2
20 months ago by shpak.max ▴ 60
0
votes
0
replies
1.7k
views
Comment: Comment: java version compatible with GATK 3.2.2
20 months ago by shpak.max ▴ 60
0
votes
0
replies
1.7k
views
Comment: Comment: java version compatible with GATK 3.2.2
20 months ago by shpak.max ▴ 60
1
vote
7
replies
1.7k
views
java version compatible with GATK 3.2.2
GATK
20 months ago by shpak.max ▴ 60
0
votes
1
reply
919
views
Comment: Comment: Merging bam files from different runs
20 months ago by shpak.max ▴ 60
0
votes
1
reply
919
views
Comment: Comment: Merging bam files from different runs
20 months ago by shpak.max ▴ 60
1
vote
5
replies
919
views
Merging bam files from different runs
samtools bam
updated 20 months ago by 154k • written 20 months ago by ▴ 60
0
votes
5
replies
1.8k
views
Stampy make fails
Stampy
updated 22 months ago by • 0 • written 4.4 years ago by ▴ 60
0
votes
0
replies
1.4k
views
Comment: Comment: Detecting heterozygous deletions in NGS sequence data
2.6 years ago by shpak.max ▴ 60
1
vote
3
replies
1.4k
views
Detecting heterozygous deletions in NGS sequence data
fastq vcf GATK
2.6 years ago by shpak.max ▴ 60
0
votes
1
reply
2.7k
views
Comment: Comment: Read lengths greater than insert length
2.6 years ago by shpak.max ▴ 60
5
votes
3
replies
2.7k
views
Read lengths greater than insert length
NGS
updated 2.6 years ago by 154k • written 2.6 years ago by ▴ 60
0
votes
1
reply
1.4k
views
Comment: Comment: Identifying adapter sequence to trim for Illumina IIx data
3.2 years ago by shpak.max ▴ 60
0
votes
3
replies
1.4k
views
Identifying adapter sequence to trim for Illumina IIx data
trimmomatic
updated 3.2 years ago by 15k • written 3.2 years ago by ▴ 60
0
votes
0
replies
2.6k
views
Comment: Comment: How does one use rename in seqkit to change sequence labels
3.2 years ago by shpak.max ▴ 60
2
votes
3
replies
2.6k
views
How does one use rename in seqkit to change sequence labels
seqkit
3.2 years ago by shpak.max ▴ 60
0
votes
1
reply
2.5k
views
Comment: Comment: Treating forward and reverse reads independently in BWA
3.2 years ago by shpak.max ▴ 60
0
votes
1
reply
2.5k
views
Comment: Comment: Treating forward and reverse reads independently in BWA
3.2 years ago by shpak.max ▴ 60
0
votes
0
replies
2.5k
views
Comment: Comment: Treating forward and reverse reads independently in BWA
3.2 years ago by shpak.max ▴ 60
0
votes
2
replies
2.5k
views
Comment: Comment: Treating forward and reverse reads independently in BWA
3.2 years ago by shpak.max ▴ 60
1
vote
10
replies
2.5k
views
Treating forward and reverse reads independently in BWA
bwa
updated 3.2 years ago by 103k • written 3.2 years ago by ▴ 60
0
votes
0
replies
1.4k
views
Comment: Comment: Sampling short reads from a library with long reads
3.2 years ago by shpak.max ▴ 60
0
votes
2
replies
1.4k
views
Sampling short reads from a library with long reads
alignments bwa
3.2 years ago by shpak.max ▴ 60
0
votes
0
replies
2.0k
views
Comment: Comment: fastq-dump throws "connection failed" error
3.4 years ago by shpak.max ▴ 60
0
votes
2
replies
2.0k
views
fastq-dump throws "connection failed" error
SRA fastq fastq-dump
3.4 years ago by shpak.max ▴ 60
1
vote
0
replies
662
views
Identifying/filtering pairwise IBD regions in diploid genomes
IBD
3.7 years ago by shpak.max ▴ 60
83 results • Page 1 of 2
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