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0
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2
replies
1.3k
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Comparing SNP coordinates from alignments to different reference genomes
Samtools
3.9 years ago by shpak.max ▴ 60
0
votes
0
replies
2.3k
views
Comment: Comment: SAM Validation Error with CleanSam (Aligment start must be <= reference seq len
3.9 years ago by shpak.max ▴ 60
0
votes
1
reply
2.3k
views
Comment: Comment: SAM Validation Error with CleanSam (Aligment start must be <= reference seq len
4.0 years ago by shpak.max ▴ 60
0
votes
2
replies
2.3k
views
Comment: Comment: SAM Validation Error with CleanSam (Aligment start must be <= reference seq len
4.0 years ago by shpak.max ▴ 60
1
vote
7
replies
2.3k
views
SAM Validation Error with CleanSam (Aligment start must be <= reference seq length)
Samtools Picard
3.9 years ago by shpak.max ▴ 60
0
votes
0
replies
651
views
Using PoolSNP to return non-SNP genotypes
PoolSNP
4.0 years ago by shpak.max ▴ 60
0
votes
0
replies
600
views
Using UnifiedGenotyper on single chromosome without coordinates
GATK
4.1 years ago by shpak.max ▴ 60
0
votes
1
reply
2.2k
views
Comment: Comment: Genotyping low read depth sequences using GATK
4.1 years ago by shpak.max ▴ 60
0
votes
3
replies
2.2k
views
Genotyping low read depth sequences using GATK
GATK
updated 4.1 years ago by ★ 1.2k • written 4.1 years ago by ▴ 60
0
votes
0
replies
8.6k
views
Comment: Comment: bcftools consensus still returns "Could not parse the header" error
4.1 years ago by shpak.max ▴ 60
0
votes
2
replies
8.6k
views
Comment: Comment: bcftools consensus still returns "Could not parse the header" error
4.1 years ago by shpak.max ▴ 60
0
votes
5
replies
8.6k
views
bcftools consensus still returns "Could not parse the header" error
bcftools samtools
4.1 years ago by shpak.max ▴ 60
0
votes
1
reply
5.0k
views
Comment: Comment: Probable bug in bcftools while parsing headers
4.1 years ago by shpak.max ▴ 60
0
votes
0
replies
530
views
PoolSNP RuntimeError: dictionary changed size during iteration
Poolsnp
4.2 years ago by shpak.max ▴ 60
0
votes
1
reply
1.9k
views
bamdst gives error "EOF marker is absent. The input is probably truncated."
bwa samtools bamdst
updated 4.0 years ago by ▴ 390 • written 4.2 years ago by ▴ 60
0
votes
1
reply
1.6k
views
Comment: Comment: Troubleshooting Missing_Read_Group and Mismatch_Flag_Mate Errors
4.2 years ago by shpak.max ▴ 60
1
vote
3
replies
1.6k
views
Troubleshooting Missing_Read_Group and Mismatch_Flag_Mate Errors
Picard BWA
updated 4.2 years ago by 154k • written 4.2 years ago by ▴ 60
0
votes
1
reply
5.4k
views
Comment: Comment: Input arguments for AddOrReplaceReadGroups (Picard) from fastq
4.2 years ago by shpak.max ▴ 60
6
votes
3
replies
5.4k
views
Input arguments for AddOrReplaceReadGroups (Picard) from fastq
Picard GATK
updated 4.2 years ago by 154k • written 4.2 years ago by ▴ 60
0
votes
0
replies
1.7k
views
Comment: Comment: Stampy make fails
4.2 years ago by shpak.max ▴ 60
0
votes
1
reply
1.7k
views
Comment: Comment: Stampy make fails
4.2 years ago by shpak.max ▴ 60
0
votes
1
reply
1.1k
views
Comment: Comment: Why split fastq files?
4.3 years ago by shpak.max ▴ 60
3
votes
3
replies
1.1k
views
Why split fastq files?
fastq alignments ngs bwa
updated 4.3 years ago by 154k • written 4.3 years ago by ▴ 60
0
votes
0
replies
859
views
Input arguments to list ancestral sequences in emboss phylip (dnapars)
Emboss phylip
updated 4.9 years ago by 20 • written 5.1 years ago by ▴ 60
0
votes
0
replies
3.0k
views
minimum information content in .maf to run mutsig
MutSig
updated 5.1 years ago by 20 • written 11.0 years ago by ▴ 60
0
votes
0
replies
2.6k
views
Comment: C: EMBOSS program for calculating dN/dS from MSA
5.2 years ago by shpak.max ▴ 60
1
vote
2
replies
2.6k
views
EMBOSS program for calculating dN/dS from MSA
EMBOSS
updated 5.2 years ago by ★ 1.7k • written 5.2 years ago by ▴ 60
0
votes
1
reply
1.8k
views
Creating .phy files in clustal without truncation
clustal phylip
updated 5.2 years ago by ★ 30k • written 5.2 years ago by ▴ 60
3
votes
10
replies
3.8k
views
DAVID and Panther can't identify certain Uniprot Accessions
DAVID UniProt Panther Gene Annotation
updated 8.4 years ago by ★ 2.4k • written 8.4 years ago by ▴ 60
0
votes
1
reply
3.8k
views
Comment: C: DAVID and Panther can't identify certain Uniprot Accessions
8.4 years ago by shpak.max ▴ 60
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