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0
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0
replies
3.0k
views
Comment:
Comment: Question about edgeR p-values/FDR values
12 months ago by
Ronin
▴ 10
0
votes
0
replies
3.0k
views
Comment:
Comment: Question about edgeR p-values/FDR values
12 months ago by
Ronin
▴ 10
0
votes
1
reply
3.0k
views
Comment:
Comment: Question about edgeR p-values/FDR values
12 months ago by
Ronin
▴ 10
1
vote
16
replies
3.0k
views
Question about edgeR p-values/FDR values
edgeR
12 months ago by
Ronin
▴ 10
0
votes
0
replies
3.0k
views
Comment:
Comment: Question about edgeR p-values/FDR values
12 months ago by
Ronin
▴ 10
0
votes
1
reply
3.0k
views
Comment:
Comment: Question about edgeR p-values/FDR values
12 months ago by
Ronin
▴ 10
0
votes
1
reply
3.0k
views
Comment:
Comment: Question about edgeR p-values/FDR values
12 months ago by
Ronin
▴ 10
0
votes
1
reply
3.0k
views
Comment:
Comment: Question about edgeR p-values/FDR values
12 months ago by
Ronin
▴ 10
0
votes
1
reply
3.0k
views
Comment:
Comment: Question about edgeR p-values/FDR values
12 months ago by
Ronin
▴ 10
0
votes
0
replies
486
views
Struggling with Meme-suite, looking for troubleshooting tips
ATAC-seq
Meme
Motifs
13 months ago by
Ronin
▴ 10
0
votes
5
replies
1.6k
views
Issue understanding ATAC-seq PCA
ATAC-seq
PCA
updated 13 months ago by
LChart
5.2k • written 13 months ago by
Ronin
▴ 10
0
votes
1
reply
1.6k
views
Comment:
Comment: Issue understanding ATAC-seq PCA
13 months ago by
Ronin
▴ 10
0
votes
1
reply
987
views
Comment:
Comment: Looking for some guidance regarding motif ontology
14 months ago by
Ronin
▴ 10
3
votes
3
replies
987
views
Looking for some guidance regarding motif ontology
ATAC-seq
motifs
HOMER
updated 14 months ago by
jared.andrews07
★ 19k • written 14 months ago by
Ronin
▴ 10
0
votes
0
replies
653
views
Comment:
Comment: Are there any resources for converting large lists of non-model genes into human
17 months ago by
Ronin
▴ 10
0
votes
2
replies
653
views
Are there any resources for converting large lists of non-model genes into human orthologs?
Gene-Ontology
17 months ago by
Ronin
▴ 10
0
votes
0
replies
735
views
Comment:
Comment: Determining biological relevance of a list of motifs?
17 months ago by
Ronin
▴ 10
0
votes
2
replies
735
views
Determining biological relevance of a list of motifs?
motifs
HOMER
17 months ago by
Ronin
▴ 10
1
vote
1
reply
1.3k
views
Comment:
Comment: Making heatmaps of ATACseq annotation data in R?
17 months ago by
Ronin
▴ 10
3
votes
4
replies
1.3k
views
Making heatmaps of ATACseq annotation data in R?
ATAC-seq
RStudio
updated 17 months ago by
rfran010
★ 1.7k • written 17 months ago by
Ronin
▴ 10
0
votes
0
replies
421
views
Looking to understand my Chi-squared results from a Pool-seq/ATAC-seq analysis
ATAC-seq
Pool-seq
17 months ago by
Ronin
▴ 10
0
votes
0
replies
671
views
Looking for an explanation as to what the Peak Score is from HOMER, not finding any answers on Biostars yet
Homer
ATAC-seq
19 months ago by
Ronin
▴ 10
0
votes
0
replies
486
views
I am getting more annotation hits from HOMER than I have actual peaks. Is that normal?
ATAC-seq
HOMER
19 months ago by
Ronin
▴ 10
0
votes
0
replies
843
views
Looking to improve my understanding of Homer's mergePeaks function: unclear of how the merged file is created?
Homer
ATACseq
19 months ago by
Ronin
▴ 10
0
votes
0
replies
1.4k
views
Comment:
Comment: I am unsure why my files are not being accepted in bedtools jaccard, any tips?
19 months ago by
Ronin
▴ 10
2
votes
4
replies
1.4k
views
I am unsure why my files are not being accepted in bedtools jaccard, any tips?
bedtools
19 months ago by
Ronin
▴ 10
0
votes
0
replies
934
views
I performed Homer's annotatePeaks.pl on multiple tissues, yet when I run annotatePeaks on the merged tissues, I get fewer total annotated peaks. Is t…
Homer
ATACseq
19 months ago by
Ronin
▴ 10
0
votes
1
reply
593
views
Wanting to make a Venn diagram of ATACseq peak files, unsure of where to start
ATAC-seq
updated 19 months ago by
Yogi
▴ 70 • written 19 months ago by
Ronin
▴ 10
0
votes
1
reply
1.7k
views
Comment:
Comment: bedToBigBed error, what am I doing wrong?
20 months ago by
Ronin
▴ 10
0
votes
1
reply
1.7k
views
Comment:
Comment: bedToBigBed error, what am I doing wrong?
20 months ago by
Ronin
▴ 10
0
votes
2
replies
1.7k
views
Comment:
Comment: bedToBigBed error, what am I doing wrong?
20 months ago by
Ronin
▴ 10
3
votes
11
replies
1.7k
views
bedToBigBed error, what am I doing wrong?
Homer
software-error
UCSC
updated 20 months ago by
Pierre Lindenbaum
166k • written 20 months ago by
Ronin
▴ 10
0
votes
0
replies
1.6k
views
Comment:
Comment: I do not understand how to get total peaks from MACS2 shown to me. What mistake(
20 months ago by
Ronin
▴ 10
1
vote
2
replies
1.6k
views
I do not understand how to get total peaks from MACS2 shown to me. What mistake(s) am I making here?
ATACseq
MACS
20 months ago by
Ronin
▴ 10
0
votes
0
replies
1.1k
views
Comment:
Comment: Homer findGO.pl questions
21 months ago by
Ronin
▴ 10
0
votes
2
replies
1.1k
views
Homer findGO.pl questions
ATACseq
21 months ago by
Ronin
▴ 10
0
votes
0
replies
425
views
Interpreting HOMER getDifferentialPeaks.pl output columns
ATACseq
21 months ago by
Ronin
▴ 10
0
votes
2
replies
795
views
Issue with chromstaR ATACseq, unable to find genome?
ATAC-seq
updated 22 months ago by
Ram
45k • written 22 months ago by
Ronin
▴ 10
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