Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
2
replies
1.5k
views
Clarification on StringTie's `--merge` parameters
stringtie stringtie-merge
updated 9 months ago by • 0 • written 16 months ago by ▴ 290
2
votes
0
replies
728
views
Comment: Comment: Feature Counts: low assigned alignments (1.9%) with -s 0: Unstranded option any
11 months ago by DGTool ▴ 290
0
votes
1
reply
1.4k
views
Comment: Comment: genome annotation and GFF file formation
11 months ago by DGTool ▴ 290
0
votes
2
replies
1.4k
views
Comment: Comment: genome annotation and GFF file formation
11 months ago by DGTool ▴ 290
1
vote
1
reply
2.8k
views
Comment: Comment: How to do datamining in bioinformatics
11 months ago by DGTool ▴ 290
0
votes
1
reply
1.1k
views
Comment: Comment: how to find the number of exome bases covered in bam file
11 months ago by DGTool ▴ 290
0
votes
1
reply
1.1k
views
Comment: Comment: how to find the number of exome bases covered in bam file
11 months ago by DGTool ▴ 290
0
votes
0
replies
516
views
Comment: Comment: only ~12% of assigned reads on featurecount
11 months ago by DGTool ▴ 290
0
votes
0
replies
568
views
Answer: Answer: Selection Pressure Analysis
11 months ago by DGTool ▴ 290
0
votes
0
replies
983
views
Comment: Comment: Are tens of DEGs still biologically meaningful?
11 months ago by DGTool ▴ 290
0
votes
0
replies
2.3k
views
Comment: Comment: featureCounts segmentation fault
11 months ago by DGTool ▴ 290
3
votes
1
reply
1.7k
views
Answer: Answer: Problem obtaining RNA-seq counts for whole gene (intron and exon), exon only, an
11 months ago by DGTool ▴ 290
0
votes
1
reply
3.5k
views
Comment: Comment: RNA-Seq mutation calling without germline data
11 months ago by DGTool ▴ 290
0
votes
1
reply
1.3k
views
Comment: Comment: Genome Assembly Workflow assessment
12 months ago by DGTool ▴ 290
2
votes
1
reply
3.5k
views
Answer: Answer: RNA-Seq mutation calling without germline data
12 months ago by DGTool ▴ 290
1
vote
0
replies
2.0k
views
Comment: Comment: Structural Variants (SV) Manta output interpretation
12 months ago by DGTool ▴ 290
1
vote
1
reply
2.0k
views
Answer: Answer: Structural Variants (SV) Manta output interpretation
12 months ago by DGTool ▴ 290
0
votes
0
replies
1.1k
views
Comment: Comment: What type of graph or visualization would be most appropriate to represent this
12 months ago by DGTool ▴ 290
2
votes
1
reply
986
views
Answer: Answer: gatk-funcotator data source
12 months ago by DGTool ▴ 290
3
votes
1
reply
1.5k
views
Answer: Answer: remove the letter a from a biplot in ggplot
12 months ago by DGTool ▴ 290
0
votes
0
replies
756
views
Comment: Comment: Weird correlation between RIP-seq replicates
12 months ago by DGTool ▴ 290
4
votes
2
replies
2.0k
views
Answer: Answer: Books and Blogs guiding the programming practice in bioformatic research?
13 months ago by DGTool ▴ 290
0
votes
1
reply
600
views
Comment: Comment: Seeking Opinions on Pipeline for Detecting Somatic Variants and Rare Germline Mu
13 months ago by DGTool ▴ 290
0
votes
1
reply
847
views
Answer: Answer: PROVEAN input for stop codon
14 months ago by DGTool ▴ 290
0
votes
0
replies
433
views
Confusion about StringTie
stringtie
updated 14 months ago by 45k • written 14 months ago by ▴ 290
1
vote
1
reply
1.9k
views
Comment: Comment: Hmisc Package error
14 months ago by DGTool ▴ 290
1
vote
1
reply
1.9k
views
Answer: Answer: Hmisc Package error
14 months ago by DGTool ▴ 290
1
vote
2
replies
2.2k
views
Comment: Comment: Nextflow process not executinhg
14 months ago by DGTool ▴ 290
1
vote
1
reply
1.4k
views
Comment: Comment: How to find genes with altered CNV from CNVkit output?
14 months ago by DGTool ▴ 290
0
votes
1
reply
2.0k
views
Comment: Comment: How to Plot Heatmap for Lower Triangular Matrix Using R
14 months ago by DGTool ▴ 290
2
votes
1
reply
1.4k
views
Answer: Answer: How to find genes with altered CNV from CNVkit output?
14 months ago by DGTool ▴ 290
0
votes
0
replies
839
views
Comment: Comment: CNVkit heatmap RAM and Runtime
15 months ago by DGTool ▴ 290
0
votes
0
replies
490
views
Comment: Comment: How to Predict Drug Targets Using Single-Sample RNA-Seq Data?
15 months ago by DGTool ▴ 290
1
vote
1
reply
1.6k
views
Comment: Comment: BAM File Quality Sequences Are "?" and File Size is Very Small After STAR Alignm
15 months ago by DGTool ▴ 290
0
votes
1
reply
3.5k
views
Comment: Comment: Ensembl IDs <-> Gene Symbols mapping -- Using org.Hs.eg.db, biomaRt or EnsDb.Hsa
15 months ago by DGTool ▴ 290
0
votes
1
reply
3.5k
views
Comment: Comment: Ensembl IDs <-> Gene Symbols mapping -- Using org.Hs.eg.db, biomaRt or EnsDb.Hsa
15 months ago by DGTool ▴ 290
2
votes
7
replies
3.5k
views
Ensembl IDs <-> Gene Symbols mapping -- Using org.Hs.eg.db, biomaRt or EnsDb.Hsapiens.v86?
org.hs.eg.db EnsDb.Hsapiens.v86 biomaRt ensembl
updated 15 months ago by ▴ 430 • written 15 months ago by ▴ 290
0
votes
0
replies
551
views
Using CNVkit for checking normal samples
CNV cnvkit
15 months ago by DGTool ▴ 290
1
vote
0
replies
546
views
Answer: Answer: Alternative Database for Somatic Indel Realignment (COSMIC Alternative)
15 months ago by DGTool ▴ 290
0
votes
1
reply
1.2k
views
Comment: Comment: GATK Structural Variants Pipeline - Steps
16 months ago by DGTool ▴ 290
0
votes
0
replies
344
views
Tool for within-sample ligand-receptor analysis (bulk RNA-seq) ?
cell-cell communication ligand-receptor self-regulation
16 months ago by DGTool ▴ 290
0
votes
1
reply
1.7k
views
Answer: Answer: Faster Needleman-Wunsch rapid global alignment of two sequences?
16 months ago by DGTool ▴ 290
0
votes
0
replies
811
views
Comment: Comment: perseus software (version 1.5.5)
16 months ago by DGTool ▴ 290
2
votes
0
replies
1.2k
views
Answer: Answer: Would you bother re-mapping RNA-seq data from an old GRCh38 build to a newer ver
16 months ago by DGTool ▴ 290
0
votes
0
replies
1.2k
views
Comment: Comment: Pluritest for pluripotency broken
16 months ago by DGTool ▴ 290
0
votes
1
reply
4.8k
views
Comment: Comment: CNVKIT - unable to produce scatter and diagram pdfs
16 months ago by DGTool ▴ 290
0
votes
0
replies
514
views
Confusion with somatic variant calling: Advice on Ensembl-compatible resources?
GATK Mutect2 ensembl
17 months ago by DGTool ▴ 290
47 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6