Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
4.1k
views
Comment: C: Extract 1M reads from paired end fastqs
updated 9.5 years ago by 154k • written 9.5 years ago by 20k
1
vote
1
reply
18k
views
Comment: C: Retrieve a subset of FASTA from large multi-FASTA file
9.5 years ago by Brian Bushnell 20k
0
votes
2
replies
19k
views
Comment: C: Tool to separate human and mouse rna seq reads
9.5 years ago by Brian Bushnell 20k
0
votes
2
replies
4.1k
views
Comment: C: kmergenie to estimate genome size and then sequencing coverage
9.5 years ago by Brian Bushnell 20k
1
vote
0
replies
4.8k
views
Comment: C: When should I trim the adapters for Illumina reads?
9.5 years ago by Brian Bushnell 20k
1
vote
0
replies
1.3k
views
Answer: C: in silico enrichment
9.5 years ago by Brian Bushnell 20k
2
votes
0
replies
2.8k
views
Comment: C: Implementing a naive javascript-based de Bruijn graph
9.5 years ago by Brian Bushnell 20k
2
votes
1
reply
2.8k
views
Comment: C: Implementing a naive javascript-based de Bruijn graph
9.5 years ago by Brian Bushnell 20k
5
votes
0
replies
4.6k
views
Answer: A: How do i assign a kmer value?
9.5 years ago by Brian Bushnell 20k
0
votes
0
replies
2.9k
views
Comment: C: Bowtie2: map reads to assembly only 95% or high similarity.
9.5 years ago by Brian Bushnell 20k
0
votes
0
replies
9.0k
views
Comment: C: BBDuk and qtrim parameter
9.6 years ago by Brian Bushnell 20k
3
votes
2
replies
9.0k
views
Answer: A: BBDuk and qtrim parameter
9.6 years ago by Brian Bushnell 20k
0
votes
0
replies
9.0k
views
Comment: C: BBDuk and qtrim parameter
9.6 years ago by Brian Bushnell 20k
0
votes
0
replies
2.6k
views
Comment: C: About possible bias due to different experimental design
9.6 years ago by Brian Bushnell 20k
2
votes
2
replies
2.6k
views
Answer: C: About possible bias due to DNA extraction kit and Illumina version used
9.7 years ago by Brian Bushnell 20k
3
votes
1
reply
8.6k
views
Comment: C: removing fasta sequences that have Ns in it in a fasta file
9.7 years ago by Brian Bushnell 20k
1
vote
1
reply
8.6k
views
Comment: A: removing fasta sequences that have Ns in it in a fasta file
9.7 years ago by Brian Bushnell 20k
0
votes
0
replies
7.0k
views
Comment: C: BBMap: Mapping Fails
9.7 years ago by Brian Bushnell 20k
2
votes
0
replies
4.7k
views
Comment: C: All reads with mapq value <= 1, htseq does not attribute counts to any feature
9.7 years ago by Brian Bushnell 20k
0
votes
3
replies
7.0k
views
Comment: C: BBMap: Mapping Fails
9.7 years ago by Brian Bushnell 20k
2
votes
1
reply
4.9k
views
Answer: A: High coverage bacterial genome reads causing spurious assemblies
9.7 years ago by Brian Bushnell 20k
0
votes
1
reply
7.0k
views
Comment: C: BBMap: Mapping Fails
9.7 years ago by Brian Bushnell 20k
0
votes
0
replies
5.6k
views
Comment: C: BBDuk trimming concern: large discarded, too aggressive (?)
9.7 years ago by Brian Bushnell 20k
2
votes
1
reply
5.6k
views
Comment: C: BBDuk trimming concern: large discarded, too aggressive (?)
9.7 years ago by Brian Bushnell 20k
0
votes
1
reply
33k
views
Comment: C: Alignment and mapping
9.7 years ago by Brian Bushnell 20k
0
votes
0
replies
8.9k
views
Comment: C: Assembly vs scaffolding
9.7 years ago by Brian Bushnell 20k
0
votes
0
replies
2.7k
views
Comment: C: STAR aligner with singletons and short reads
9.7 years ago by Brian Bushnell 20k
1
vote
1
reply
8.9k
views
Comment: C: Assembly vs scaffolding
9.7 years ago by Brian Bushnell 20k
1
vote
1
reply
8.9k
views
Comment: C: Assembly vs scaffolding
9.7 years ago by Brian Bushnell 20k
1
vote
1
reply
8.9k
views
Comment: C: Assembly vs scaffolding
9.7 years ago by Brian Bushnell 20k
1
vote
1
reply
8.9k
views
Comment: C: Assembly vs scaffolding
9.7 years ago by Brian Bushnell 20k
0
votes
1
reply
8.9k
views
Comment: C: Assembly vs scaffolding
9.7 years ago by Brian Bushnell 20k
4
votes
1
reply
3.9k
views
Answer: A: RNA seq FASTX quality trimming
9.7 years ago by Brian Bushnell 20k
0
votes
1
reply
3.9k
views
Comment: C: RNA seq FASTX quality trimming
9.7 years ago by Brian Bushnell 20k
0
votes
0
replies
6.7k
views
Comment: C: Illumina X ten samples have phred scores out of range [0,41]
9.7 years ago by Brian Bushnell 20k
1
vote
0
replies
6.7k
views
Comment: C: Illumina X ten samples have phred scores out of range [0,41]
9.7 years ago by Brian Bushnell 20k
1
vote
1
reply
8.9k
views
Comment: C: Assembly vs scaffolding
9.7 years ago by Brian Bushnell 20k
4
votes
1
reply
6.7k
views
Comment: C: Illumina X ten samples have phred scores out of range [0,41]
9.7 years ago by Brian Bushnell 20k
2
votes
1
reply
8.9k
views
Comment: C: Assembly vs scaffolding
9.7 years ago by Brian Bushnell 20k
1
vote
1
reply
8.9k
views
Comment: C: Assembly vs scaffolding
9.7 years ago by Brian Bushnell 20k
2
votes
1
reply
3.9k
views
Answer: A: Saturation analysis on downstream processed reads, fitting formula in data
9.7 years ago by Brian Bushnell 20k
2
votes
0
replies
11k
views
Comment: C: bwa mem hard clipping
9.7 years ago by Brian Bushnell 20k
1
vote
0
replies
70k
views
Comment: Comment: Recommended Tools For Alternative Splicing Detection From Rna-Seq Data
updated 3.4 years ago by 45k • written 9.7 years ago by 20k
1
vote
0
replies
1.6k
views
Answer: Answer: Fast way to get 0-distance, 1-distance, or x-distance reads aligned to reference
updated 3.4 years ago by 45k • written 9.8 years ago by 20k
0
votes
0
replies
1.7k
views
Comment: C: Microbiome data: Should unmatched reads be included in Shannon Diversity calcula
9.8 years ago by Brian Bushnell 20k
0
votes
0
replies
1.9k
views
Comment: Comment: How to fix mates in PE Illumina data after alignment and discard reads with no m
updated 3.6 years ago by 45k • written 9.8 years ago by 20k
1
vote
0
replies
3.9k
views
Answer: Answer: Length of FASTA lines
updated 3.3 years ago by 45k • written 9.8 years ago by 20k
0
votes
0
replies
17k
views
Comment: Comment: How to identify 16s sequences from binning data(contigs)?
updated 3.2 years ago by 45k • written 10.1 years ago by 20k
0
votes
0
replies
2.7k
views
Comment: C: How can I calcualte the sequence identity and coverage form GMAP output bam file
9.8 years ago by Brian Bushnell 20k
2
votes
0
replies
3.1k
views
Answer: A: Tophat prep_read error
9.9 years ago by Brian Bushnell 20k
2,083 results • Page 33 of 42
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6