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0
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4.1k
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Comment: C: Extract 1M reads from paired end fastqs
updated 9.3 years ago by 154k • written 9.3 years ago by 20k
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18k
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Comment: C: Retrieve a subset of FASTA from large multi-FASTA file
9.3 years ago by Brian Bushnell 20k
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2
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18k
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Comment: C: Tool to separate human and mouse rna seq reads
9.3 years ago by Brian Bushnell 20k
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2
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3.9k
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Comment: C: kmergenie to estimate genome size and then sequencing coverage
9.3 years ago by Brian Bushnell 20k
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4.7k
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Comment: C: When should I trim the adapters for Illumina reads?
9.3 years ago by Brian Bushnell 20k
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0
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1.2k
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Answer: C: in silico enrichment
9.3 years ago by Brian Bushnell 20k
2
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0
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2.8k
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Comment: C: Implementing a naive javascript-based de Bruijn graph
9.3 years ago by Brian Bushnell 20k
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1
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2.8k
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Comment: C: Implementing a naive javascript-based de Bruijn graph
9.3 years ago by Brian Bushnell 20k
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4.4k
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Answer: A: How do i assign a kmer value?
9.4 years ago by Brian Bushnell 20k
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0
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2.8k
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Comment: C: Bowtie2: map reads to assembly only 95% or high similarity.
9.4 years ago by Brian Bushnell 20k
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0
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8.8k
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Comment: C: BBDuk and qtrim parameter
9.4 years ago by Brian Bushnell 20k
3
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2
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8.8k
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Answer: A: BBDuk and qtrim parameter
9.4 years ago by Brian Bushnell 20k
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0
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8.8k
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Comment: C: BBDuk and qtrim parameter
9.4 years ago by Brian Bushnell 20k
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0
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2.5k
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Comment: C: About possible bias due to different experimental design
9.5 years ago by Brian Bushnell 20k
2
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2
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2.5k
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Answer: C: About possible bias due to DNA extraction kit and Illumina version used
9.5 years ago by Brian Bushnell 20k
3
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1
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8.4k
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Comment: C: removing fasta sequences that have Ns in it in a fasta file
9.5 years ago by Brian Bushnell 20k
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1
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8.4k
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Comment: A: removing fasta sequences that have Ns in it in a fasta file
9.5 years ago by Brian Bushnell 20k
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0
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6.8k
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Comment: C: BBMap: Mapping Fails
9.5 years ago by Brian Bushnell 20k
2
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0
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4.5k
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Comment: C: All reads with mapq value <= 1, htseq does not attribute counts to any feature
9.5 years ago by Brian Bushnell 20k
0
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3
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6.8k
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Comment: C: BBMap: Mapping Fails
9.5 years ago by Brian Bushnell 20k
2
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1
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4.7k
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Answer: A: High coverage bacterial genome reads causing spurious assemblies
9.5 years ago by Brian Bushnell 20k
0
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1
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6.8k
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Comment: C: BBMap: Mapping Fails
9.5 years ago by Brian Bushnell 20k
0
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0
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5.4k
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Comment: C: BBDuk trimming concern: large discarded, too aggressive (?)
9.5 years ago by Brian Bushnell 20k
2
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1
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5.4k
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Comment: C: BBDuk trimming concern: large discarded, too aggressive (?)
9.5 years ago by Brian Bushnell 20k
0
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1
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32k
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Comment: C: Alignment and mapping
9.6 years ago by Brian Bushnell 20k
0
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0
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8.7k
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Comment: C: Assembly vs scaffolding
9.6 years ago by Brian Bushnell 20k
0
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0
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2.7k
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Comment: C: STAR aligner with singletons and short reads
9.6 years ago by Brian Bushnell 20k
1
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1
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8.7k
views
Comment: C: Assembly vs scaffolding
9.6 years ago by Brian Bushnell 20k
1
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1
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8.7k
views
Comment: C: Assembly vs scaffolding
9.6 years ago by Brian Bushnell 20k
1
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1
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8.7k
views
Comment: C: Assembly vs scaffolding
9.6 years ago by Brian Bushnell 20k
1
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1
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8.7k
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Comment: C: Assembly vs scaffolding
9.6 years ago by Brian Bushnell 20k
0
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1
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8.7k
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Comment: C: Assembly vs scaffolding
9.6 years ago by Brian Bushnell 20k
4
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1
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3.7k
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Answer: A: RNA seq FASTX quality trimming
9.6 years ago by Brian Bushnell 20k
0
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1
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3.7k
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Comment: C: RNA seq FASTX quality trimming
9.6 years ago by Brian Bushnell 20k
0
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0
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6.5k
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Comment: C: Illumina X ten samples have phred scores out of range [0,41]
9.6 years ago by Brian Bushnell 20k
1
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0
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6.5k
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Comment: C: Illumina X ten samples have phred scores out of range [0,41]
9.6 years ago by Brian Bushnell 20k
1
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1
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8.7k
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Comment: C: Assembly vs scaffolding
9.6 years ago by Brian Bushnell 20k
4
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1
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6.5k
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Comment: C: Illumina X ten samples have phred scores out of range [0,41]
9.6 years ago by Brian Bushnell 20k
2
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1
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8.7k
views
Comment: C: Assembly vs scaffolding
9.6 years ago by Brian Bushnell 20k
1
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1
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8.7k
views
Comment: C: Assembly vs scaffolding
9.6 years ago by Brian Bushnell 20k
2
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1
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3.8k
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Answer: A: Saturation analysis on downstream processed reads, fitting formula in data
9.6 years ago by Brian Bushnell 20k
2
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0
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10k
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Comment: C: bwa mem hard clipping
9.6 years ago by Brian Bushnell 20k
1
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0
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70k
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Comment: Comment: Recommended Tools For Alternative Splicing Detection From Rna-Seq Data
updated 3.2 years ago by 45k • written 9.6 years ago by 20k
1
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0
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1.6k
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Answer: Answer: Fast way to get 0-distance, 1-distance, or x-distance reads aligned to reference
updated 3.2 years ago by 45k • written 9.6 years ago by 20k
0
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0
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1.6k
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Comment: C: Microbiome data: Should unmatched reads be included in Shannon Diversity calcula
9.6 years ago by Brian Bushnell 20k
0
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0
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1.8k
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Comment: Comment: How to fix mates in PE Illumina data after alignment and discard reads with no m
updated 3.5 years ago by 45k • written 9.6 years ago by 20k
1
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0
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3.7k
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Answer: Answer: Length of FASTA lines
updated 3.2 years ago by 45k • written 9.6 years ago by 20k
0
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0
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17k
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Comment: Comment: How to identify 16s sequences from binning data(contigs)?
updated 3.1 years ago by 45k • written 10.0 years ago by 20k
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0
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2.7k
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Comment: C: How can I calcualte the sequence identity and coverage form GMAP output bam file
9.7 years ago by Brian Bushnell 20k
2
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0
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3.0k
views
Answer: A: Tophat prep_read error
9.8 years ago by Brian Bushnell 20k
2,083 results • Page 33 of 42
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