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Comment: Comment: Viral positive and negative strand with paired sequencing and bowtie
23 months ago by Brian Bushnell 20k
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769
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Answer: Answer: Partition reads in BAM file by MAG
23 months ago by Brian Bushnell 20k
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3.4k
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Answer: Answer: Can BWA (mem) detect longer deletions?
23 months ago by Brian Bushnell 20k
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0
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892
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Comment: Comment: Reducing BWA mem seed length when a genome is highly heterozygous?
23 months ago by Brian Bushnell 20k
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1.7k
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Comment: Comment: Average Coverage after Assembly (Spades)
23 months ago by Brian Bushnell 20k
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0
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1.7k
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Answer: Answer: Average Coverage after Assembly (Spades)
23 months ago by Brian Bushnell 20k
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1
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1.3k
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Answer: Answer: Detect STRs in illumina library
23 months ago by Brian Bushnell 20k
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1
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4.8k
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Answer: Answer: What is the correct procedure to generate a consensus bacterial sequence?
23 months ago by Brian Bushnell 20k
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0
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1.1k
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Answer: Answer: Lower alignment rate when using collapsed reads
23 months ago by Brian Bushnell 20k
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0
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1.6k
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Answer: Answer: Recommendations for extending contigs from denovo assembly to identify SV insert
23 months ago by Brian Bushnell 20k
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1
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2.1k
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Comment: Comment: vcf.gz to vcf
23 months ago by Brian Bushnell 20k
2
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1
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8.3k
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Answer: Answer: Convert amino acid sequences into nucleotide sequences
23 months ago by Brian Bushnell 20k
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1
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1.5k
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Answer: Answer: Viral positive and negative strand with paired sequencing and bowtie
23 months ago by Brian Bushnell 20k
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0
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1.2k
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Answer: Answer: How to choose the best tool for variant trio analysis
23 months ago by Brian Bushnell 20k
2
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2
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2.2k
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Answer: Answer: Aligner with statistics included?
updated 23 months ago by 45k • written 23 months ago by 20k
2
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1
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3.7k
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Answer: Answer: Building reference dbSNP file for citrus sinensis using 80 WGS samples
23 months ago by Brian Bushnell 20k
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0
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5.9k
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Answer: Answer: Which alignment for whole bacterial genomes for phylogenetic tree?
23 months ago by Brian Bushnell 20k
2
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0
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1.5k
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Answer: Answer: Estimating Index Hopping
23 months ago by Brian Bushnell 20k
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0
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1.8k
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Comment: Comment: checkstrand tool (from BBMap suite) question
23 months ago by Brian Bushnell 20k
0
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1
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1.8k
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Comment: Comment: checkstrand tool (from BBMap suite) question
23 months ago by Brian Bushnell 20k
0
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0
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1.8k
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Comment: Comment: checkstrand tool (from BBMap suite) question
23 months ago by Brian Bushnell 20k
1
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1
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1.8k
views
Answer: Answer: checkstrand tool (from BBMap suite) question
updated 23 months ago by 153k • written 23 months ago by 20k
1
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3
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1.8k
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Answer: Answer: checkstrand tool (from BBMap suite) question
updated 23 months ago by 153k • written 23 months ago by 20k
0
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0
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2.2k
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Comment: Comment: BBTools 39.03 releaed!
23 months ago by Brian Bushnell 20k
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0
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2.2k
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Comment: Comment: BBTools 39.03 releaed!
23 months ago by Brian Bushnell 20k
12
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4
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2.2k
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Tool: BBTools 39.03 released!
BBTools BBMap
23 months ago by Brian Bushnell 20k
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0
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17k
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Comment: Comment: BBSketch - A Tool for Rapid Sequence Comparison
3.0 years ago by Brian Bushnell 20k
26
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22
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17k
views
10 follow
Tool: BBSketch - A Tool for Rapid Sequence Comparison
minhash sketch bbmap blast
updated 2.4 years ago by 45k • written 8.6 years ago by 20k
3
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1
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2.5k
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Answer: Answer: Help with clumpify.sh
3.1 years ago by Brian Bushnell 20k
2
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1
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3.1k
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Comment: Comment: BBSplit index creation seems to use a subset of the references provided
3.3 years ago by Brian Bushnell 20k
2
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1
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3.1k
views
Answer: Answer: BBSplit index creation seems to use a subset of the references provided
3.3 years ago by Brian Bushnell 20k
0
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1
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1.5k
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Comment: Comment: Clumpify on multiple files
3.7 years ago by Brian Bushnell 20k
3
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1
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3.6k
views
Answer: C: BBMap tool error - randomreads.sh
4.8 years ago by Brian Bushnell 20k
79
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86
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40k
views
20 follow
Tool: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remove duplicates.
clumpify storage bbmap pigz compression
updated 2.3 years ago by 45k • written 8.8 years ago by 20k
0
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0
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3.1k
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Comment: C: Can Tophat2 Align a Book?
updated 5.3 years ago by 45k • written 10.1 years ago by 20k
0
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0
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40k
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Comment: C: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
5.3 years ago by Brian Bushnell 20k
4
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1
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3.0k
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Answer: A: Current challenges in SARS-CoV-2 analysis?
5.5 years ago by Brian Bushnell 20k
2
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2
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10k
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Answer: Answer: Calculate percentage of bases covered less than nX in targeted sequencing experi
updated 3.5 years ago by 45k • written 10.7 years ago by 20k
0
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1
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17k
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Comment: C: BBSketch - A Tool for Rapid Sequence Comparison
updated 5.7 years ago by 153k • written 5.7 years ago by 20k
0
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1
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3.4k
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Comment: C: BBMap NullPointer during initialization
updated 5.7 years ago by 45k • written 9.6 years ago by 20k
2
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1
reply
17k
views
Comment: C: How to identify 16s sequences from binning data(contigs)?
updated 5.7 years ago by 45k • written 9.6 years ago by 20k
1
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0
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4.9k
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Comment: C: kmer alignment with mismatch
updated 5.7 years ago by 45k • written 9.6 years ago by 20k
2
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1
reply
14k
views
Comment: C: RNA-seq differential expression analysis, which aligner to choose between BWA/to
updated 5.7 years ago by 45k • written 9.6 years ago by 20k
8
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0
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27k
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Comment: C: Splice aware aligner - what does it mean?
updated 5.7 years ago by 45k • written 9.6 years ago by 20k
1
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1
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2.2k
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Comment: C: Remove duplicates in two databases
updated 5.7 years ago by 45k • written 9.6 years ago by 20k
8
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0
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22k
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Answer: A: Extract sequence with header from a fasta file with specific ID given in another
updated 5.7 years ago by 45k • written 10.7 years ago by 20k
1
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1
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3.4k
views
Comment: C: Identify sequencing adaptor contamination programatically
updated 5.7 years ago by 45k • written 9.7 years ago by 20k
0
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0
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4.1k
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Answer: A: Extract only sequences that have N nucleotides
updated 5.8 years ago by 45k • written 9.7 years ago by 20k
1
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1
reply
14k
views
Comment: C: How detrimental are duplicate reads in RNAseq experiments?
updated 5.8 years ago by 45k • written 9.7 years ago by 20k
1
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1
reply
5.9k
views
Comment: C: samtools merge extremely slow
updated 5.8 years ago by 45k • written 9.7 years ago by 20k
2,083 results • Page 4 of 42
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