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Answer: Answer: Lower alignment rate when using collapsed reads
7 months ago by Brian Bushnell 20k
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0
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951
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Answer: Answer: Recommendations for extending contigs from denovo assembly to identify SV insert
7 months ago by Brian Bushnell 20k
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1
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3.6k
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Answer: Answer: Convert amino acid sequences into nucleotide sequences
7 months ago by Brian Bushnell 20k
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689
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Answer: Answer: Viral positive and negative strand with paired sequencing and bowtie
7 months ago by Brian Bushnell 20k
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641
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Answer: Answer: How to choose the best tool for variant trio analysis
7 months ago by Brian Bushnell 20k
2
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2
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1.0k
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Answer: Answer: Aligner with statistics included?
updated 7 months ago by 43k • written 7 months ago by 20k
2
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1
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1.9k
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Answer: Answer: Building reference dbSNP file for citrus sinensis using 80 WGS samples
7 months ago by Brian Bushnell 20k
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1.8k
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Answer: Answer: Which alignment for whole bacterial genomes for phylogenetic tree?
7 months ago by Brian Bushnell 20k
2
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643
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Answer: Answer: Estimating Index Hopping
7 months ago by Brian Bushnell 20k
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1
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849
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Answer: Answer: checkstrand tool (from BBMap suite) question
updated 7 months ago by 142k • written 7 months ago by 20k
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3
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849
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Answer: Answer: checkstrand tool (from BBMap suite) question
updated 7 months ago by 142k • written 7 months ago by 20k
3
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1
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1.5k
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Answer: Answer: Help with clumpify.sh
21 months ago by Brian Bushnell 20k
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2.0k
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Answer: Answer: BBSplit index creation seems to use a subset of the references provided
23 months ago by Brian Bushnell 20k
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1
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2.2k
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Answer: C: BBMap tool error - randomreads.sh
3.4 years ago by Brian Bushnell 20k
4
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1
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2.2k
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Answer: A: Current challenges in SARS-CoV-2 analysis?
4.1 years ago by Brian Bushnell 20k
2
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2
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8.1k
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Answer: Answer: Calculate percentage of bases covered less than nX in targeted sequencing experi
updated 2.1 years ago by 43k • written 9.3 years ago by 20k
8
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0
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20k
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Answer: A: Extract sequence with header from a fasta file with specific ID given in another
updated 4.4 years ago by 43k • written 9.3 years ago by 20k
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3.2k
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Answer: A: Extract only sequences that have N nucleotides
updated 4.4 years ago by 43k • written 8.3 years ago by 20k
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1
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4.8k
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Answer: A: samtools merge extremely slow
updated 4.4 years ago by 43k • written 8.3 years ago by 20k
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0
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1.6k
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Answer: A: Fast imputation of variants for 4x WGS?
updated 4.4 years ago by 43k • written 8.3 years ago by 20k
2
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0
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2.5k
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Answer: A: Extracting nucleotide immediately prior to mapped read
updated 4.4 years ago by 43k • written 8.3 years ago by 20k
4
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1
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11k
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Answer: A: How detrimental are duplicate reads in RNAseq experiments?
updated 4.4 years ago by 43k • written 8.3 years ago by 20k
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1.4k
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Answer: A: Bowtie2 - Force alignment of terminal mismatches
updated 4.4 years ago by 43k • written 8.3 years ago by 20k
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0
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3.9k
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Answer: C: Does anyone know any specific 1000 genomes WGS data that is around 30x coverage?
updated 4.4 years ago by 43k • written 8.3 years ago by 20k
3
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16k
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Answer: A: How to efficiently remove a list of reads from BAM file?
updated 4.4 years ago by 43k • written 8.3 years ago by 20k
1
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1
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3.9k
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Answer: A: Buying computational resources vs. renting allocation on cluster
updated 4.4 years ago by 43k • written 8.4 years ago by 20k
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1
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2.3k
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Answer: A: Assembly reads from only one file
updated 4.4 years ago by 43k • written 8.4 years ago by 20k
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1
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9.3k
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Answer: A: Looking for reputable tool to find low complexity regions in FASTQ or BAM files
updated 4.4 years ago by 43k • written 8.4 years ago by 20k
1
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0
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3.4k
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Answer: A: get deletion coverage from .bam file
updated 4.4 years ago by 43k • written 8.4 years ago by 20k
0
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1
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5.4k
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Answer: A: Plasmid Genome Assembly
updated 4.4 years ago by 43k • written 8.4 years ago by 20k
3
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0
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3.4k
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Answer: A: Is it true that N50 is not an important parameter for quality in Transcriptome A
updated 4.4 years ago by 43k • written 8.4 years ago by 20k
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0
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2.5k
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Answer: A: auto trimming of adapter and 8 base normalizing sequence from miRNA reads
updated 4.4 years ago by 43k • written 8.4 years ago by 20k
2
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0
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1.9k
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Answer: A: Overlapping paired end read simulator
updated 4.4 years ago by 43k • written 8.4 years ago by 20k
5
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2
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7.9k
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Answer: A: de novo sequence assembly with extremely high coverage
updated 4.4 years ago by 43k • written 8.5 years ago by 20k
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0
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2.4k
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Answer: A: Viral Genome SNP and Indel Detection
updated 4.5 years ago by 43k • written 8.5 years ago by 20k
1
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0
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5.5k
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Answer: A: Which aligner is best suited for circular human mitochondrial genome?
updated 4.5 years ago by 43k • written 8.5 years ago by 20k
5
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1
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6.2k
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Answer: A: rRNA decontamination of RNA-Seq reads (tool choice, introns etc)
4.5 years ago by Brian Bushnell 20k
1
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3
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5.0k
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Answer: A: Lack of consensus between NGS & Sanger sequencing on indels/mutations
updated 4.5 years ago by 43k • written 8.5 years ago by 20k
2
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0
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3.4k
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Answer: A: Plotting Coverage - Strand specification
updated 4.5 years ago by 43k • written 8.5 years ago by 20k
0
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0
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8.1k
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Answer: A: trim_galore and cutadapt to paired-end DNA sequencing
updated 4.5 years ago by 43k • written 8.5 years ago by 20k
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0
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2.5k
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Answer: A: How to merge similar transcripts together?
updated 4.5 years ago by 43k • written 8.5 years ago by 20k
3
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2
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9.1k
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Answer: A: DNA composition - all k-mers and their frequency in some sequencing data
updated 4.5 years ago by 43k • written 8.5 years ago by 20k
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0
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1.6k
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Answer: A: Statistical method of deducing the probability of a ratio being 1:2 for pairs of
updated 4.5 years ago by 43k • written 8.5 years ago by 20k
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1
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1.8k
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Answer: C: Java for MSA to compare two sequences from different files
updated 4.5 years ago by 43k • written 8.5 years ago by 20k
12
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2
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15k
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Answer: A: How to remove contamination from the transcriptome assembly
updated 4.5 years ago by 43k • written 8.5 years ago by 20k
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0
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4.5k
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Answer: A: primer trimming tools
updated 4.5 years ago by 43k • written 8.5 years ago by 20k
1
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1
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1.7k
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Answer: A: Unknown mapping difference from host removal
updated 4.5 years ago by 43k • written 8.5 years ago by 20k
1
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1
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6.2k
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Answer: A: Can Q10 be better than Q30
updated 4.5 years ago by 43k • written 8.5 years ago by 20k
3
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1
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5.1k
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Answer: A: adding suffix /1 & /2 to PE data - abyss input data
updated 4.5 years ago by 43k • written 8.5 years ago by 20k
0
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1
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17k
views
Answer: A: Bowtie 2 - is there a way to discard reads mapping to multiple locations?
updated 4.5 years ago by 43k • written 8.6 years ago by 20k
621 results • Page 2 of 13
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