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5
votes
9
replies
2.0k
views
Missing Input files Error with snakemake pipeline
abricate snakemake
updated 2.4 years ago by ★ 2.1k • written 2.4 years ago by ▴ 740
1
vote
1
reply
1.2k
views
Snakemake input error with files from inconsistent naming scheme
snakemake MinION Nanopore cDNA
3.6 years ago by skbrimer ▴ 740
8
votes
6
replies
6.0k
views
loading yaml file into snakemake
Assembly software error
4.5 years ago by skbrimer ▴ 740
1
vote
1
reply
836
views
Guidance for key amino acid analysis
alignment
4.7 years ago by skbrimer ▴ 740
5
votes
9
replies
4.6k
views
BioPython: how to edit a fasta file to include a large deletion
Assembly next-gen alignment sequence biopython
updated 5.5 years ago by 3.9k • written 8.2 years ago by ▴ 740
0
votes
0
replies
1.4k
views
Input needed on conclusion reporting
alignment de novo Assembly
updated 5.8 years ago by 20 • written 8.1 years ago by ▴ 740
0
votes
0
replies
901
views
Phylogenetic Analysis Reference request
alignment snp sequencing
6.1 years ago by skbrimer ▴ 740
3
votes
4
replies
3.0k
views
Generating a multi fasta consensus bcftools v1.7
samtools bcftools
updated 11 months ago by 43k • written 6.1 years ago by ▴ 740
16
votes
19
replies
7.6k
views
7 follow
Controls for Sequencing
NGS sequencing general
updated 6.3 years ago by ▴ 10 • written 7.9 years ago by ▴ 740
3
votes
3
replies
2.3k
views
python script to sort blast results and fetch best matches from NCBI
Assembly alignment sequence python
6.3 years ago by skbrimer ▴ 740
4
votes
5
replies
3.2k
views
SnpEff Custom DB for Recombinant virus
snp genome
6.6 years ago by skbrimer ▴ 740
1
vote
0
replies
1.6k
views
MLST ST Interpretations
MLST NGS
6.8 years ago by skbrimer ▴ 740
2
votes
14
replies
1.8k
views
Streptococcus genome alignments
Assembly mapping
6.9 years ago by skbrimer ▴ 740
4
votes
9
replies
1.3k
views
SOLVED:Multiple aligner failures but no error(Closed)
alignment
7.4 years ago by skbrimer ▴ 740
0
votes
0
replies
1.1k
views
variant annotation of a recombinant genome
sequencing SNP
7.5 years ago by skbrimer ▴ 740
2
votes
2
replies
1.3k
views
BLAST pipeline operations
Assembly QC
7.6 years ago by skbrimer ▴ 740
1
vote
4
replies
1.4k
views
EDIT: Repeat region drop out
Assembly
7.6 years ago by skbrimer ▴ 740
14
votes
4
replies
27k
views
Samtools 1.3 bam to fastq
software error
updated 7.7 years ago by 20 • written 8.1 years ago by ▴ 740
4
votes
6
replies
1.5k
views
Determining inhouse cut offs
coverage
updated 12 months ago by 43k • written 7.7 years ago by ▴ 740
1
vote
6
replies
1.5k
views
Interpreting de novo contig output
de novo RNA-Seq
7.8 years ago by skbrimer ▴ 740
2
votes
3
replies
5.3k
views
EDIT:SOLVED:changing the fasta header in a multi-fasta file with biopython.
biopython
8.1 years ago by skbrimer ▴ 740
3
votes
3
replies
6.0k
views
Bed file loading issues
igv Bed
updated 21 months ago by 43k • written 8.3 years ago by ▴ 740
3
votes
3
replies
2.1k
views
More file parsing :) ***EDIT*** how do I make a fast and bed file from Genbank file - SOLVED
biopython
updated 21 months ago by 43k • written 8.3 years ago by ▴ 740
3
votes
4
replies
4.1k
views
Biopython script to change file formats and headers
biopython processing
updated 3.0 years ago by 43k • written 8.3 years ago by ▴ 740
5
votes
6
replies
2.7k
views
Building a pipeline
RNA-Seq analysis ngs snakemake reporting
updated 2.6 years ago by 43k • written 8.5 years ago by ▴ 740
1
vote
2
replies
1.7k
views
Unknown mapping difference from host removal
Host-removal Ion-Torrent
updated 20 months ago by 43k • written 8.5 years ago by ▴ 740
9
votes
18
replies
6.2k
views
Can Q10 be better than Q30
sequencing Assembly software-error
updated 20 months ago by 43k • written 8.5 years ago by ▴ 740
0
votes
0
replies
1.3k
views
WGS vs targeted assemblies
Assembly
updated 20 months ago by 43k • written 8.5 years ago by ▴ 740
0
votes
9
replies
2.7k
views
SNP visualization with nucleotide %
snp R alignment
updated 20 months ago by 43k • written 8.5 years ago by ▴ 740
4
votes
3
replies
2.1k
views
RNA-Seq Strand Bias
RNA-Seq sequencing
updated 19 months ago by 43k • written 8.6 years ago by ▴ 740
0
votes
0
replies
1.5k
views
Different results from the same data sets
alignment sequencing genome
updated 18 months ago by 43k • written 8.7 years ago by ▴ 740
2
votes
3
replies
2.6k
views
viral genome concensus calling using samtools
alignment SNP sequencing
updated 16 months ago by 43k • written 8.8 years ago by ▴ 740
1
vote
1
reply
1.2k
views
More MUMmer questions
alignment genome
updated 14 months ago by 43k • written 9.0 years ago by ▴ 740
2
votes
1
reply
1.6k
views
de novo workflow
alignment sequencing genome
updated 14 months ago by 43k • written 9.0 years ago by ▴ 740
1
vote
4
replies
1.7k
views
The hard way?
Assembly
updated 21 months ago by 43k • written 9.0 years ago by ▴ 740
0
votes
0
replies
1.4k
views
Determination of non-clonal/quasi-species from samples
next-gen-sequencing
updated 23 months ago by 43k • written 9.1 years ago by ▴ 740
3
votes
8
replies
6.1k
views
Using Biopython and BLAST+ to automate de novo viral contig sorting
Assembly Biopython blast next-gen
updated 2.1 years ago by 43k • written 9.4 years ago by ▴ 740
37 results • Page 1 of 1
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