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Showing :
questions
1
vote
5
replies
559
views
Centrifuge Index creation issue
metagenomics
centrifuge
3 months ago by
skbrimer
▴ 740
5
votes
9
replies
2.3k
views
Missing Input files Error with snakemake pipeline
abricate
snakemake
updated 3.0 years ago by
Eric Lim
★ 2.2k • written 3.1 years ago by
skbrimer
▴ 740
1
vote
1
reply
1.4k
views
Snakemake input error with files from inconsistent naming scheme
snakemake
MinION
Nanopore
cDNA
4.2 years ago by
skbrimer
▴ 740
8
votes
6
replies
6.4k
views
loading yaml file into snakemake
Assembly
software error
5.1 years ago by
skbrimer
▴ 740
1
vote
1
reply
931
views
Guidance for key amino acid analysis
alignment
5.3 years ago by
skbrimer
▴ 740
5
votes
9
replies
4.9k
views
BioPython: how to edit a fasta file to include a large deletion
Assembly
next-gen
alignment
sequence
biopython
updated 6.1 years ago by
Leonor Palmeira
3.9k • written 8.8 years ago by
skbrimer
▴ 740
0
votes
0
replies
1.4k
views
Input needed on conclusion reporting
alignment
de novo
Assembly
updated 6.4 years ago by
Biostar
20 • written 8.7 years ago by
skbrimer
▴ 740
0
votes
0
replies
975
views
Phylogenetic Analysis Reference request
alignment
snp
sequencing
6.7 years ago by
skbrimer
▴ 740
3
votes
4
replies
3.2k
views
Generating a multi fasta consensus bcftools v1.7
samtools
bcftools
updated 18 months ago by
Ram
44k • written 6.7 years ago by
skbrimer
▴ 740
16
votes
19
replies
8.7k
views
7 follow
Controls for Sequencing
NGS
sequencing
general
updated 6.9 years ago by
pmiller
▴ 10 • written 8.5 years ago by
skbrimer
▴ 740
3
votes
3
replies
2.4k
views
python script to sort blast results and fetch best matches from NCBI
Assembly
alignment
sequence
python
6.9 years ago by
skbrimer
▴ 740
4
votes
5
replies
3.4k
views
SnpEff Custom DB for Recombinant virus
snp
genome
7.2 years ago by
skbrimer
▴ 740
1
vote
0
replies
1.6k
views
MLST ST Interpretations
MLST
NGS
7.4 years ago by
skbrimer
▴ 740
2
votes
14
replies
2.1k
views
Streptococcus genome alignments
Assembly
mapping
7.5 years ago by
skbrimer
▴ 740
4
votes
9
replies
1.5k
views
SOLVED:Multiple aligner failures but no error(Closed)
alignment
8.0 years ago by
skbrimer
▴ 740
0
votes
0
replies
1.2k
views
variant annotation of a recombinant genome
sequencing
SNP
8.1 years ago by
skbrimer
▴ 740
2
votes
2
replies
1.4k
views
BLAST pipeline operations
Assembly
QC
8.2 years ago by
skbrimer
▴ 740
1
vote
4
replies
1.5k
views
EDIT: Repeat region drop out
Assembly
8.3 years ago by
skbrimer
▴ 740
14
votes
4
replies
30k
views
Samtools 1.3 bam to fastq
software error
updated 8.3 years ago by
Biostar
20 • written 8.7 years ago by
skbrimer
▴ 740
4
votes
6
replies
1.6k
views
Determining inhouse cut offs
coverage
updated 20 months ago by
Ram
44k • written 8.3 years ago by
skbrimer
▴ 740
1
vote
6
replies
1.6k
views
Interpreting de novo contig output
de novo
RNA-Seq
8.4 years ago by
skbrimer
▴ 740
2
votes
3
replies
5.6k
views
EDIT:SOLVED:changing the fasta header in a multi-fasta file with biopython.
biopython
8.7 years ago by
skbrimer
▴ 740
3
votes
3
replies
6.3k
views
Bed file loading issues
igv
Bed
updated 2.3 years ago by
Ram
44k • written 8.9 years ago by
skbrimer
▴ 740
3
votes
3
replies
2.3k
views
More file parsing :) ***EDIT*** how do I make a fast and bed file from Genbank file - SOLVED
biopython
updated 2.3 years ago by
Ram
44k • written 8.9 years ago by
skbrimer
▴ 740
3
votes
4
replies
4.3k
views
Biopython script to change file formats and headers
biopython
processing
updated 3.6 years ago by
Ram
44k • written 8.9 years ago by
skbrimer
▴ 740
5
votes
6
replies
2.8k
views
Building a pipeline
RNA-Seq
analysis
ngs
snakemake
reporting
updated 3.2 years ago by
Ram
44k • written 9.1 years ago by
skbrimer
▴ 740
1
vote
2
replies
1.8k
views
Unknown mapping difference from host removal
Host-removal
Ion-Torrent
updated 2.3 years ago by
Ram
44k • written 9.1 years ago by
skbrimer
▴ 740
9
votes
18
replies
7.0k
views
Can Q10 be better than Q30
sequencing
Assembly
software-error
updated 2.3 years ago by
Ram
44k • written 9.1 years ago by
skbrimer
▴ 740
0
votes
0
replies
1.3k
views
WGS vs targeted assemblies
Assembly
updated 2.3 years ago by
Ram
44k • written 9.1 years ago by
skbrimer
▴ 740
0
votes
9
replies
3.0k
views
SNP visualization with nucleotide %
snp
R
alignment
updated 2.3 years ago by
Ram
44k • written 9.1 years ago by
skbrimer
▴ 740
4
votes
3
replies
2.3k
views
RNA-Seq Strand Bias
RNA-Seq
sequencing
updated 2.2 years ago by
Ram
44k • written 9.2 years ago by
skbrimer
▴ 740
0
votes
0
replies
1.6k
views
Different results from the same data sets
alignment
sequencing
genome
updated 2.1 years ago by
Ram
44k • written 9.3 years ago by
skbrimer
▴ 740
2
votes
3
replies
2.8k
views
viral genome concensus calling using samtools
alignment
SNP
sequencing
updated 23 months ago by
Ram
44k • written 9.4 years ago by
skbrimer
▴ 740
1
vote
1
reply
1.3k
views
More MUMmer questions
alignment
genome
updated 22 months ago by
Ram
44k • written 9.6 years ago by
skbrimer
▴ 740
2
votes
1
reply
1.7k
views
de novo workflow
alignment
sequencing
genome
updated 22 months ago by
Ram
44k • written 9.6 years ago by
skbrimer
▴ 740
1
vote
4
replies
1.8k
views
The hard way?
Assembly
updated 2.4 years ago by
Ram
44k • written 9.6 years ago by
skbrimer
▴ 740
0
votes
0
replies
1.5k
views
Determination of non-clonal/quasi-species from samples
next-gen-sequencing
updated 2.5 years ago by
Ram
44k • written 9.7 years ago by
skbrimer
▴ 740
3
votes
8
replies
6.4k
views
Using Biopython and BLAST+ to automate de novo viral contig sorting
Assembly
Biopython
blast
next-gen
updated 2.7 years ago by
Ram
44k • written 10.0 years ago by
skbrimer
▴ 740
38 results • Page
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