Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
6
replies
2.2k
views
Getting matrix of QDs from VCF file
vcf snp
updated 7 months ago by • 0 • written 7.0 years ago by ▴ 510
2
votes
1
reply
313
views
Extract read position where a base is covered, and the allele at that base
samtools bam bwa
updated 3 months ago by 40k • written 10 months ago by ▴ 510
0
votes
0
replies
11k
views
Comment: Comment: How to download dbSNP153 vcf files in hg19/GRCH37 version
11 months ago by Jautis ▴ 510
0
votes
1
reply
331
views
Extract mapped SE and properly paired PE reads from a bam file
properly single bam end mapped paired
updated 16 months ago by ★ 1.2k • written 16 months ago by ▴ 510
0
votes
1
reply
785
views
Answer: Answer: My PCA plot looks good but i don't have differentially expressed genes
18 months ago by Jautis ▴ 510
2
votes
0
replies
655
views
Comment: Comment: Should I normalize the data before or after filtering to a particular cell type?
19 months ago by Jautis ▴ 510
4
votes
0
replies
509
views
Comment: Comment: Differntial Gene Expression analysis
19 months ago by Jautis ▴ 510
0
votes
0
replies
519
views
Comment: Comment: SNPs with multiple nucleotides
19 months ago by Jautis ▴ 510
2
votes
1
reply
519
views
Answer: Answer: SNPs with multiple nucleotides
19 months ago by Jautis ▴ 510
0
votes
1
reply
435
views
Comment: Comment: Capture Hi-C processing yields sparse matrices
19 months ago by Jautis ▴ 510
0
votes
0
replies
662
views
Comment: Comment: Alternatives to TMM normalization
19 months ago by Jautis ▴ 510
7
votes
4
replies
662
views
Alternatives to TMM normalization
voom expression R limma
19 months ago by Jautis ▴ 510
1
vote
0
replies
2.6k
views
Answer: Answer: How can I colour UMAP by sample batches
20 months ago by Jautis ▴ 510
0
votes
0
replies
1.2k
views
Comment: Comment: single cell RNA-seq: Is there a way to tell if one dataset is more similar to an
20 months ago by Jautis ▴ 510
0
votes
0
replies
510
views
Comment: Comment: Can I do differential analysis without phenodata?
20 months ago by Jautis ▴ 510
3
votes
1
reply
740
views
Answer: Answer: mutation not in RNAseq read
20 months ago by Jautis ▴ 510
1
vote
1
reply
1.2k
views
Comment: Comment: single cell RNA-seq: Is there a way to tell if one dataset is more similar to an
20 months ago by Jautis ▴ 510
0
votes
0
replies
1.6k
views
Comment: Comment: Merge two vcf's, keep only intersection of REF/ALT alleles
20 months ago by Jautis ▴ 510
0
votes
0
replies
285
views
Using bcftools to merge files of different individuals, getting only shared sites
vcf genotypes bcftools
20 months ago by Jautis ▴ 510
1
vote
2
replies
1.2k
views
Answer: Answer: single cell RNA-seq: Is there a way to tell if one dataset is more similar to an
20 months ago by Jautis ▴ 510
2
votes
3
replies
1.0k
views
Error running smartpca from eigensoft: failed to create thread
pca genotypes smartpca eigensoft
22 months ago by Jautis ▴ 510
1
vote
0
replies
1.0k
views
Comment: Comment: Error running smartpca from eigensoft: failed to create thread
22 months ago by Jautis ▴ 510
0
votes
1
reply
1.0k
views
Comment: Comment: Error running smartpca from eigensoft: failed to create thread
22 months ago by Jautis ▴ 510
1
vote
0
replies
685
views
Comment: Comment: Finding a sequence
22 months ago by Jautis ▴ 510
1
vote
1
reply
3.4k
views
Comment: Comment: fastqc html file
22 months ago by Jautis ▴ 510
0
votes
1
reply
3.5k
views
Comment: Comment: multiqc could not generate results
22 months ago by Jautis ▴ 510
0
votes
0
replies
722
views
Comment: Comment: Conserved regions in multiple fasta files (multiple species)?
22 months ago by Jautis ▴ 510
0
votes
0
replies
3.4k
views
Comment: Comment: fastqc html file
22 months ago by Jautis ▴ 510
2
votes
2
replies
888
views
Trim 100bp PE sequencing to 50bp reads
unix bash sequencing fastq
updated 22 months ago by 21k • written 22 months ago by ▴ 510
0
votes
0
replies
967
views
Comment: Comment: Bam file: replace low quality bases with "N"
23 months ago by Jautis ▴ 510
2
votes
2
replies
967
views
Bam file: replace low quality bases with "N"
quality base bam
23 months ago by Jautis ▴ 510
0
votes
1
reply
1.4k
views
Comment: Comment: limma+voom flips the sign of the effect from CPM?
2.0 years ago by Jautis ▴ 510
1
vote
4
replies
1.4k
views
limma+voom flips the sign of the effect from CPM?
voom expression limma R
updated 2.0 years ago by ★ 6.4k • written 2.0 years ago by ▴ 510
0
votes
1
reply
1.4k
views
Comment: Comment: voom mean-variance plot has set of genes where variance increases with expressio
2.0 years ago by Jautis ▴ 510
0
votes
1
reply
1.4k
views
Comment: Comment: voom mean-variance plot has set of genes where variance increases with expressio
2.0 years ago by Jautis ▴ 510
5
votes
5
replies
1.4k
views
voom mean-variance plot has set of genes where variance increases with expression level
voom expression limma R
updated 2.0 years ago by ★ 6.4k • written 2.0 years ago by ▴ 510
0
votes
0
replies
1.9k
views
Comment: Comment: unable to impute with beagle after filtering VCF table using vcftools
2.4 years ago by Jautis ▴ 510
1
vote
1
reply
1.9k
views
Comment: Comment: unable to impute with beagle after filtering VCF table using vcftools
2.4 years ago by Jautis ▴ 510
0
votes
0
replies
839
views
Comment: Comment: Could someone help me check what genomic position is this variant nomenclature r
2.4 years ago by Jautis ▴ 510
0
votes
1
reply
2.6k
views
Comment: Comment: How to calculate percent coverage of each read for nanopore
2.4 years ago by Jautis ▴ 510
1
vote
0
replies
2.6k
views
Comment: Comment: How to calculate percent coverage of each read for nanopore
2.4 years ago by Jautis ▴ 510
0
votes
0
replies
1.5k
views
Comment: Comment: Cannot color cells with 0 expression in certain color
2.4 years ago by Jautis ▴ 510
0
votes
0
replies
491
views
Calculating Fst from low coverage data using genotype likelihoods
vcftools fst population_differentiation
2.4 years ago by Jautis ▴ 510
0
votes
0
replies
4.0k
views
Comment: C: Calculating Tajima's D from SNP frequency data
2.7 years ago by Jautis ▴ 510
0
votes
0
replies
3.6k
views
Comment: C: A strange R limma voom function mean-variance trend
2.7 years ago by Jautis ▴ 510
0
votes
0
replies
7.5k
views
Answer: A: 012 genotype matrix using vcf tools
2.8 years ago by Jautis ▴ 510
7
votes
15
replies
6.5k
views
6 follow
Modifying fasta file based on vcf information
reference-genome vcf fasta
updated 9 months ago by 40k • written 8.3 years ago by ▴ 510
0
votes
0
replies
549
views
GO based on NCBI annotation
genome enrichment GSEA GO
3.1 years ago by Jautis ▴ 510
0
votes
0
replies
1.1k
views
Comment: C: Phasing non-human genomes with Beagle - do I need to divide subjects by populati
3.2 years ago by Jautis ▴ 510
0
votes
1
reply
12k
views
Comment: C: How to remove a list of reads from fastq file?
3.3 years ago by Jautis ▴ 510
145 results • Page 1 of 3
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6