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Comment: Comment: Match variants for allele frequency, LD score, and other features
1 day ago by Jautis ▴ 520
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323
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Comment: Comment: bcftools mipileup error: format error, unexpected A at line 1
17 days ago by Jautis ▴ 520
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319
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Answer: Answer: improving genome sequence read depth and confidence by combining sequences from
17 days ago by Jautis ▴ 520
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182
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Match variants for allele frequency, LD score, and other features
snp
1 day ago by Jautis ▴ 520
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6
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2.2k
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Getting matrix of QDs from VCF file
vcf snp
updated 8 months ago by • 0 • written 7.1 years ago by ▴ 520
2
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1
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342
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Extract read position where a base is covered, and the allele at that base
samtools bam bwa
updated 5 months ago by 41k • written 12 months ago by ▴ 520
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0
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12k
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Comment: Comment: How to download dbSNP153 vcf files in hg19/GRCH37 version
13 months ago by Jautis ▴ 520
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1
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356
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Extract mapped SE and properly paired PE reads from a bam file
properly single bam end mapped paired
updated 18 months ago by ★ 1.2k • written 18 months ago by ▴ 520
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1
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821
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Answer: Answer: My PCA plot looks good but i don't have differentially expressed genes
20 months ago by Jautis ▴ 520
2
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0
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703
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Comment: Comment: Should I normalize the data before or after filtering to a particular cell type?
20 months ago by Jautis ▴ 520
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538
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Comment: Comment: Differntial Gene Expression analysis
20 months ago by Jautis ▴ 520
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0
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552
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Comment: Comment: SNPs with multiple nucleotides
20 months ago by Jautis ▴ 520
2
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1
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552
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Answer: Answer: SNPs with multiple nucleotides
21 months ago by Jautis ▴ 520
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1
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482
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Comment: Comment: Capture Hi-C processing yields sparse matrices
21 months ago by Jautis ▴ 520
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0
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709
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Comment: Comment: Alternatives to TMM normalization
21 months ago by Jautis ▴ 520
7
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4
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709
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Alternatives to TMM normalization
voom expression R limma
21 months ago by Jautis ▴ 520
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0
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2.7k
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Answer: Answer: How can I colour UMAP by sample batches
22 months ago by Jautis ▴ 520
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0
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1.2k
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Comment: Comment: single cell RNA-seq: Is there a way to tell if one dataset is more similar to an
22 months ago by Jautis ▴ 520
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0
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545
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Comment: Comment: Can I do differential analysis without phenodata?
22 months ago by Jautis ▴ 520
3
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1
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792
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Answer: Answer: mutation not in RNAseq read
22 months ago by Jautis ▴ 520
1
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1
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1.2k
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Comment: Comment: single cell RNA-seq: Is there a way to tell if one dataset is more similar to an
22 months ago by Jautis ▴ 520
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0
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1.6k
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Comment: Comment: Merge two vcf's, keep only intersection of REF/ALT alleles
22 months ago by Jautis ▴ 520
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0
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309
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Using bcftools to merge files of different individuals, getting only shared sites
vcf genotypes bcftools
22 months ago by Jautis ▴ 520
1
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2
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1.2k
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Answer: Answer: single cell RNA-seq: Is there a way to tell if one dataset is more similar to an
22 months ago by Jautis ▴ 520
2
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3
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1.1k
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Error running smartpca from eigensoft: failed to create thread
pca genotypes smartpca eigensoft
24 months ago by Jautis ▴ 520
1
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0
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1.1k
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Comment: Comment: Error running smartpca from eigensoft: failed to create thread
24 months ago by Jautis ▴ 520
0
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1
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1.1k
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Comment: Comment: Error running smartpca from eigensoft: failed to create thread
24 months ago by Jautis ▴ 520
1
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0
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716
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Comment: Comment: Finding a sequence
24 months ago by Jautis ▴ 520
1
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1
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3.7k
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Comment: Comment: fastqc html file
24 months ago by Jautis ▴ 520
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1
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3.7k
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Comment: Comment: multiqc could not generate results
24 months ago by Jautis ▴ 520
0
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0
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765
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Comment: Comment: Conserved regions in multiple fasta files (multiple species)?
24 months ago by Jautis ▴ 520
0
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0
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3.7k
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Comment: Comment: fastqc html file
24 months ago by Jautis ▴ 520
2
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2
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945
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Trim 100bp PE sequencing to 50bp reads
unix bash sequencing fastq
updated 2.0 years ago by 21k • written 2.0 years ago by ▴ 520
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0
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1.0k
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Comment: Comment: Bam file: replace low quality bases with "N"
2.1 years ago by Jautis ▴ 520
2
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2
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1.0k
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Bam file: replace low quality bases with "N"
quality base bam
2.1 years ago by Jautis ▴ 520
0
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1
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1.5k
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Comment: Comment: limma+voom flips the sign of the effect from CPM?
2.2 years ago by Jautis ▴ 520
1
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4
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1.5k
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limma+voom flips the sign of the effect from CPM?
voom expression limma R
updated 2.2 years ago by ★ 6.5k • written 2.2 years ago by ▴ 520
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1
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1.5k
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Comment: Comment: voom mean-variance plot has set of genes where variance increases with expressio
2.2 years ago by Jautis ▴ 520
0
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1
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1.5k
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Comment: Comment: voom mean-variance plot has set of genes where variance increases with expressio
2.2 years ago by Jautis ▴ 520
5
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5
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1.5k
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voom mean-variance plot has set of genes where variance increases with expression level
voom expression limma R
updated 2.2 years ago by ★ 6.5k • written 2.2 years ago by ▴ 520
0
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0
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2.0k
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Comment: Comment: unable to impute with beagle after filtering VCF table using vcftools
2.6 years ago by Jautis ▴ 520
1
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1
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2.0k
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Comment: Comment: unable to impute with beagle after filtering VCF table using vcftools
2.6 years ago by Jautis ▴ 520
0
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0
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888
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Comment: Comment: Could someone help me check what genomic position is this variant nomenclature r
2.6 years ago by Jautis ▴ 520
0
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1
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2.7k
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Comment: Comment: How to calculate percent coverage of each read for nanopore
2.6 years ago by Jautis ▴ 520
1
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0
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2.7k
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Comment: Comment: How to calculate percent coverage of each read for nanopore
2.6 years ago by Jautis ▴ 520
0
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0
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1.6k
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Comment: Comment: Cannot color cells with 0 expression in certain color
2.6 years ago by Jautis ▴ 520
0
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0
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513
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Calculating Fst from low coverage data using genotype likelihoods
vcftools fst population_differentiation
2.6 years ago by Jautis ▴ 520
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0
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4.0k
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Comment: C: Calculating Tajima's D from SNP frequency data
2.9 years ago by Jautis ▴ 520
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0
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3.7k
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Comment: C: A strange R limma voom function mean-variance trend
2.9 years ago by Jautis ▴ 520
0
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0
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7.6k
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Answer: A: 012 genotype matrix using vcf tools
3.0 years ago by Jautis ▴ 520
149 results • Page 1 of 3
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