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0
votes
0
replies
12k
views
Answer:
Answer: WGCNA package in R: dendogram plot error
23 months ago by
rodd
▴ 250
1
vote
3
replies
1.1k
views
Brain cell type deconvolution
deconvolution
RNA-seq
cibersortx
updated 19 months ago by
Aspire
▴ 370 • written 2.0 years ago by
rodd
▴ 250
0
votes
0
replies
1.1k
views
Comment:
Comment: inverse normal transformation for gtex data
2.1 years ago by
rodd
▴ 250
0
votes
1
reply
32k
views
Comment:
Comment: How to calculate effect(beta) and SE from z-score and p-value?
2.2 years ago by
rodd
▴ 250
0
votes
1
reply
789
views
Comment:
Comment: Determining transcripts for repetitive elements in RNA-seq data
2.2 years ago by
rodd
▴ 250
0
votes
3
replies
789
views
Determining transcripts for repetitive elements in RNA-seq data
transcript
rna-seq
stringtie
updated 2.2 years ago by
rpolicastro
13k • written 2.2 years ago by
rodd
▴ 250
0
votes
0
replies
32k
views
Comment:
Comment: How to calculate effect(beta) and SE from z-score and p-value?
3.4 years ago by
rodd
▴ 250
0
votes
1
reply
5.6k
views
Comment:
Comment: PCAtools: everything Principal Components Analysis
3.5 years ago by
rodd
▴ 250
2
votes
2
replies
2.0k
views
Is there a FASTA file containing 1000 Genomes variant information to check reference alleles in VCF files?
checkvcf
reference allele
1000 genomes
updated 3.9 years ago by
Biostar
20 • written 5.5 years ago by
rodd
▴ 250
4
votes
1
reply
12k
views
Answer:
A: How to get just protein_coding genes using biomart in R
4.1 years ago by
rodd
▴ 250
0
votes
0
replies
9.7k
views
Comment:
C: Obtaining rsIDs using BiomaRt or linux
4.1 years ago by
rodd
▴ 250
1
vote
3
replies
1.5k
views
Surrogate variables in eQTL studies
eqtl
gtex
covariates
deseq2
sva
4.2 years ago by
rodd
▴ 250
3
votes
1
reply
1.7k
views
Answer:
A: Best practices in eQTL analysis
4.3 years ago by
rodd
▴ 250
0
votes
1
reply
1.5k
views
Comment:
C: Surrogate variables in eQTL studies
4.3 years ago by
rodd
▴ 250
0
votes
0
replies
2.7k
views
Comment:
C: Covariates for eQTL analysis
4.3 years ago by
rodd
▴ 250
0
votes
0
replies
2.1k
views
Comment:
C: RNAseq Normalization for eQTL Mapping?
4.3 years ago by
rodd
▴ 250
13
votes
7
replies
22k
views
trimming fastq files with Trimmomatic
QC
RNA-Seq
updated 23 months ago by
Ram
44k • written 9.5 years ago by
rodd
▴ 250
0
votes
0
replies
22k
views
Comment:
C: How to get all genes for a specific list of regions in R preferably using Biomar
4.4 years ago by
rodd
▴ 250
1
vote
1
reply
22k
views
Comment:
C: How to get all genes for a specific list of regions in R preferably using Biomar
4.4 years ago by
rodd
▴ 250
0
votes
1
reply
53k
views
Comment:
C: Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
4.4 years ago by
rodd
▴ 250
0
votes
0
replies
976
views
Answer:
A: Testing similarity between functional genomic annotations
4.9 years ago by
rodd
▴ 250
3
votes
2
replies
976
views
Testing similarity between functional genomic annotations
garfield
functional genomics
genomic annotations
R
4.9 years ago by
rodd
▴ 250
1
vote
0
replies
20k
views
Comment:
C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
5.1 years ago by
rodd
▴ 250
0
votes
0
replies
18k
views
Comment:
C: filtering rRNA from fastq files or mapping results
5.1 years ago by
rodd
▴ 250
0
votes
1
reply
20k
views
Comment:
C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
5.1 years ago by
rodd
▴ 250
0
votes
1
reply
20k
views
Comment:
C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
5.1 years ago by
rodd
▴ 250
0
votes
1
reply
20k
views
Comment:
C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
5.1 years ago by
rodd
▴ 250
0
votes
1
reply
20k
views
Comment:
C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
5.1 years ago by
rodd
▴ 250
1
vote
0
replies
9.9k
views
Comment:
Comment: WGCNA pearson or bicor? Also, should I adjust module correlation Pvalues by Bonf
22 months ago by
rodd
▴ 250
0
votes
1
reply
9.9k
views
Comment:
C: WGCNA pearson or bicor? Also, should I adjust module correlation Pvalues by Bonf
5.1 years ago by
rodd
▴ 250
0
votes
1
reply
9.9k
views
Comment:
C: WGCNA pearson or bicor? Also, should I adjust module correlation Pvalues by Bonf
5.1 years ago by
rodd
▴ 250
13
votes
6
replies
1.8k
views
Effect of gene size on WGCNA
wgcna
gene size
gene length
deseq2
updated 5.1 years ago by
i.sudbery
20k • written 5.1 years ago by
rodd
▴ 250
0
votes
0
replies
1.8k
views
Comment:
C: Effect of gene size on WGCNA
5.1 years ago by
rodd
▴ 250
0
votes
1
reply
22k
views
Comment:
Comment: trimming fastq files with Trimmomatic
updated 23 months ago by
Ram
44k • written 9.5 years ago by
rodd
▴ 250
0
votes
0
replies
24k
views
Comment:
C: Lift-over on a VCF
5.2 years ago by
rodd
▴ 250
0
votes
0
replies
24k
views
Comment:
C: Lift-over on a VCF
5.2 years ago by
rodd
▴ 250
0
votes
0
replies
34k
views
Comment:
C: terminate called after throwing an instance of 'std::bad_alloc?
5.3 years ago by
rodd
▴ 250
0
votes
1
reply
4.0k
views
Comment:
C: WGCNA error: "Error in cutreeDynamic"
5.3 years ago by
rodd
▴ 250
1
vote
1
reply
13k
views
Comment:
C: Best Way To Quantify Influence Of Different Covariates On Gene Expression?
5.3 years ago by
rodd
▴ 250
0
votes
0
replies
31k
views
Comment:
C: Converting SNP from chr:pos to rs number using PLINK?
5.3 years ago by
rodd
▴ 250
1
vote
1
reply
31k
views
Comment:
C: Converting SNP from chr:pos to rs number using PLINK?
5.5 years ago by
rodd
▴ 250
0
votes
1
reply
9.1k
views
Comment:
C: Generating heatmaps of pre-selected candidate genes after deseq2
5.5 years ago by
rodd
▴ 250
2
votes
0
replies
16k
views
Answer:
A: How To Separate Snp Variants From Indel Variants In The Same Vcf File
5.5 years ago by
rodd
▴ 250
0
votes
0
replies
18k
views
Comment:
C: Filtering Imputation output: how to filter on a VCF INFO field
5.5 years ago by
rodd
▴ 250
0
votes
0
replies
3.5k
views
Answer:
A: how to unzip Michigan imputation server output compressed folder
5.6 years ago by
rodd
▴ 250
0
votes
0
replies
2.3k
views
Comment:
C: how to check if SNP falls in the exon region
5.7 years ago by
rodd
▴ 250
0
votes
0
replies
11k
views
Comment:
C: deseq2 user defined size factors
5.7 years ago by
rodd
▴ 250
0
votes
1
reply
11k
views
Comment:
C: deseq2 user defined size factors
5.7 years ago by
rodd
▴ 250
0
votes
0
replies
26k
views
Comment:
C: How can I change the default path to which SRA files are downloaded?
5.8 years ago by
rodd
▴ 250
0
votes
0
replies
11k
views
Comment:
C: download all samples from a study in BioProject
5.9 years ago by
rodd
▴ 250
61 results • Page
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