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Answer: Answer: WGCNA package in R: dendogram plot error
2.7 years ago by rodd ▴ 250
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3
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1.5k
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Brain cell type deconvolution
deconvolution RNA-seq cibersortx
updated 2.4 years ago by ▴ 390 • written 2.8 years ago by ▴ 250
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1.5k
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Comment: Comment: inverse normal transformation for gtex data
2.9 years ago by rodd ▴ 250
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1
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36k
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Comment: Comment: How to calculate effect(beta) and SE from z-score and p-value?
2.9 years ago by rodd ▴ 250
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1
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1.1k
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Comment: Comment: Determining transcripts for repetitive elements in RNA-seq data
2.9 years ago by rodd ▴ 250
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3
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1.1k
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Determining transcripts for repetitive elements in RNA-seq data
transcript rna-seq stringtie
updated 2.9 years ago by 13k • written 3.0 years ago by ▴ 250
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0
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36k
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Comment: Comment: How to calculate effect(beta) and SE from z-score and p-value?
4.2 years ago by rodd ▴ 250
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1
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6.7k
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Comment: Comment: PCAtools: everything Principal Components Analysis
4.3 years ago by rodd ▴ 250
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2
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2.4k
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Is there a FASTA file containing 1000 Genomes variant information to check reference alleles in VCF files?
checkvcf reference allele 1000 genomes
updated 4.7 years ago by 20 • written 6.3 years ago by ▴ 250
4
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1
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14k
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Answer: A: How to get just protein_coding genes using biomart in R
4.9 years ago by rodd ▴ 250
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11k
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Comment: C: Obtaining rsIDs using BiomaRt or linux
4.9 years ago by rodd ▴ 250
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3
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1.8k
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Surrogate variables in eQTL studies
eqtl gtex covariates deseq2 sva
5.0 years ago by rodd ▴ 250
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1
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2.1k
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Answer: A: Best practices in eQTL analysis
5.1 years ago by rodd ▴ 250
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1
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1.8k
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Comment: C: Surrogate variables in eQTL studies
5.1 years ago by rodd ▴ 250
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3.3k
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Comment: C: Covariates for eQTL analysis
5.1 years ago by rodd ▴ 250
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2.5k
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Comment: C: RNAseq Normalization for eQTL Mapping?
5.1 years ago by rodd ▴ 250
13
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7
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23k
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trimming fastq files with Trimmomatic
QC RNA-Seq
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 250
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23k
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Comment: C: How to get all genes for a specific list of regions in R preferably using Biomar
5.1 years ago by rodd ▴ 250
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1
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23k
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Comment: C: How to get all genes for a specific list of regions in R preferably using Biomar
5.1 years ago by rodd ▴ 250
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1
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65k
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Comment: C: Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
5.2 years ago by rodd ▴ 250
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0
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1.2k
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Answer: A: Testing similarity between functional genomic annotations
5.7 years ago by rodd ▴ 250
3
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2
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1.2k
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Testing similarity between functional genomic annotations
garfield functional genomics genomic annotations R
5.7 years ago by rodd ▴ 250
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0
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21k
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Comment: C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
5.9 years ago by rodd ▴ 250
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0
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20k
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Comment: C: filtering rRNA from fastq files or mapping results
5.9 years ago by rodd ▴ 250
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1
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21k
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Comment: C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
5.9 years ago by rodd ▴ 250
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1
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21k
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Comment: C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
5.9 years ago by rodd ▴ 250
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1
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21k
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Comment: C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
5.9 years ago by rodd ▴ 250
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1
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21k
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Comment: C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
5.9 years ago by rodd ▴ 250
1
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0
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12k
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Comment: Comment: WGCNA pearson or bicor? Also, should I adjust module correlation Pvalues by Bonf
2.7 years ago by rodd ▴ 250
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1
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12k
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Comment: C: WGCNA pearson or bicor? Also, should I adjust module correlation Pvalues by Bonf
5.9 years ago by rodd ▴ 250
0
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1
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12k
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Comment: C: WGCNA pearson or bicor? Also, should I adjust module correlation Pvalues by Bonf
5.9 years ago by rodd ▴ 250
13
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6
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2.3k
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Effect of gene size on WGCNA
wgcna gene size gene length deseq2
updated 5.9 years ago by 22k • written 5.9 years ago by ▴ 250
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2.3k
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Comment: C: Effect of gene size on WGCNA
5.9 years ago by rodd ▴ 250
0
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1
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23k
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Comment: Comment: trimming fastq files with Trimmomatic
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 250
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0
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26k
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Comment: C: Lift-over on a VCF
6.0 years ago by rodd ▴ 250
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0
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26k
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Comment: C: Lift-over on a VCF
6.0 years ago by rodd ▴ 250
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0
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36k
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Comment: C: terminate called after throwing an instance of 'std::bad_alloc?
6.1 years ago by rodd ▴ 250
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1
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4.9k
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Comment: C: WGCNA error: "Error in cutreeDynamic"
6.1 years ago by rodd ▴ 250
1
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1
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14k
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Comment: C: Best Way To Quantify Influence Of Different Covariates On Gene Expression?
6.1 years ago by rodd ▴ 250
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0
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33k
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Comment: C: Converting SNP from chr:pos to rs number using PLINK?
6.1 years ago by rodd ▴ 250
1
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1
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33k
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Comment: C: Converting SNP from chr:pos to rs number using PLINK?
6.2 years ago by rodd ▴ 250
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1
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9.9k
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Comment: C: Generating heatmaps of pre-selected candidate genes after deseq2
6.3 years ago by rodd ▴ 250
2
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0
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17k
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Answer: A: How To Separate Snp Variants From Indel Variants In The Same Vcf File
6.3 years ago by rodd ▴ 250
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0
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20k
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Comment: C: Filtering Imputation output: how to filter on a VCF INFO field
6.3 years ago by rodd ▴ 250
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4.0k
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Answer: A: how to unzip Michigan imputation server output compressed folder
6.3 years ago by rodd ▴ 250
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2.5k
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Comment: C: how to check if SNP falls in the exon region
6.4 years ago by rodd ▴ 250
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12k
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Comment: C: deseq2 user defined size factors
6.4 years ago by rodd ▴ 250
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1
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12k
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Comment: C: deseq2 user defined size factors
6.4 years ago by rodd ▴ 250
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0
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29k
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Comment: C: How can I change the default path to which SRA files are downloaded?
6.6 years ago by rodd ▴ 250
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0
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12k
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Comment: C: download all samples from a study in BioProject
6.7 years ago by rodd ▴ 250
61 results • Page 1 of 2
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