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Answer: Answer: WGCNA package in R: dendogram plot error
10 weeks ago by rodd ▴ 200
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2
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310
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Brain cell type deconvolution
deconvolution RNA-seq cibersortx
updated 3 months ago by 38k • written 3 months ago by ▴ 200
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0
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338
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Comment: Comment: inverse normal transformation for gtex data
4 months ago by rodd ▴ 200
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1
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20k
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Comment: Comment: How to calculate effect(beta) and SE from z-score and p-value?
5 months ago by rodd ▴ 200
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1
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305
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Comment: Comment: Determining transcripts for repetitive elements in RNA-seq data
5 months ago by rodd ▴ 200
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3
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305
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Determining transcripts for repetitive elements in RNA-seq data
transcript rna-seq stringtie
updated 5 months ago by 11k • written 5 months ago by ▴ 200
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0
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20k
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Comment: Comment: How to calculate effect(beta) and SE from z-score and p-value?
20 months ago by rodd ▴ 200
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1
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3.9k
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Comment: Comment: PCAtools: everything Principal Components Analysis
21 months ago by rodd ▴ 200
2
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2
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1.3k
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Is there a FASTA file containing 1000 Genomes variant information to check reference alleles in VCF files?
checkvcf reference allele 1000 genomes
updated 2.2 years ago by 20 • written 3.8 years ago by ▴ 200
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0
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7.8k
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Answer: A: How to get just protein_coding genes using biomart in R
2.4 years ago by rodd ▴ 200
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0
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7.3k
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Comment: C: Obtaining rsIDs using BiomaRt or linux
2.4 years ago by rodd ▴ 200
1
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3
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1.0k
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Surrogate variables in eQTL studies
eqtl gtex covariates deseq2 sva
2.5 years ago by rodd ▴ 200
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1
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1.1k
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Answer: A: Best practices in eQTL analysis
2.6 years ago by rodd ▴ 200
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1
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1.0k
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Comment: C: Surrogate variables in eQTL studies
2.6 years ago by rodd ▴ 200
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0
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1.8k
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Comment: C: Covariates for eQTL analysis
2.6 years ago by rodd ▴ 200
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0
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1.6k
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Comment: C: RNAseq Normalization for eQTL Mapping?
2.6 years ago by rodd ▴ 200
13
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7
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20k
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trimming fastq files with Trimmomatic
QC RNA-Seq
updated 10 weeks ago by 38k • written 7.8 years ago by ▴ 200
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0
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18k
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Comment: C: How to get all genes for a specific list of regions in R preferably using Biomar
2.6 years ago by rodd ▴ 200
1
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1
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18k
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Comment: C: How to get all genes for a specific list of regions in R preferably using Biomar
2.6 years ago by rodd ▴ 200
0
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1
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34k
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Comment: C: Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
2.7 years ago by rodd ▴ 200
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0
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637
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Answer: A: Testing similarity between functional genomic annotations
3.2 years ago by rodd ▴ 200
3
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2
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637
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Testing similarity between functional genomic annotations
garfield functional genomics genomic annotations R
3.2 years ago by rodd ▴ 200
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0
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12k
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Comment: C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
3.3 years ago by rodd ▴ 200
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0
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16k
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Comment: C: filtering rRNA from fastq files or mapping results
3.3 years ago by rodd ▴ 200
0
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1
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12k
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Comment: C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
3.3 years ago by rodd ▴ 200
0
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1
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12k
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Comment: C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
3.4 years ago by rodd ▴ 200
0
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1
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12k
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Comment: C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
3.4 years ago by rodd ▴ 200
0
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1
reply
12k
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Comment: C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
3.4 years ago by rodd ▴ 200
1
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0
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7.2k
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Comment: Comment: WGCNA pearson or bicor? Also, should I adjust module correlation Pvalues by Bonf
8 weeks ago by rodd ▴ 200
0
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1
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7.2k
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Comment: C: WGCNA pearson or bicor? Also, should I adjust module correlation Pvalues by Bonf
3.4 years ago by rodd ▴ 200
0
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1
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7.2k
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Comment: C: WGCNA pearson or bicor? Also, should I adjust module correlation Pvalues by Bonf
3.4 years ago by rodd ▴ 200
11
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6
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1.1k
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Effect of gene size on WGCNA
wgcna gene size gene length deseq2
updated 3.4 years ago by 16k • written 3.4 years ago by ▴ 200
0
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0
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1.1k
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Comment: C: Effect of gene size on WGCNA
3.4 years ago by rodd ▴ 200
0
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1
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20k
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Comment: Comment: trimming fastq files with Trimmomatic
updated 10 weeks ago by 38k • written 7.8 years ago by ▴ 200
0
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0
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20k
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Comment: C: Lift-over on a VCF
3.5 years ago by rodd ▴ 200
0
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0
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20k
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Comment: C: Lift-over on a VCF
3.5 years ago by rodd ▴ 200
0
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0
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23k
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Comment: C: terminate called after throwing an instance of 'std::bad_alloc?
3.6 years ago by rodd ▴ 200
0
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1
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2.9k
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Comment: C: WGCNA error: "Error in cutreeDynamic"
3.6 years ago by rodd ▴ 200
1
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1
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11k
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Comment: C: Best Way To Quantify Influence Of Different Covariates On Gene Expression?
3.6 years ago by rodd ▴ 200
0
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0
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25k
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Comment: C: Converting SNP from chr:pos to rs number using PLINK?
3.6 years ago by rodd ▴ 200
1
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1
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25k
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Comment: C: Converting SNP from chr:pos to rs number using PLINK?
3.7 years ago by rodd ▴ 200
0
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1
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6.5k
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Comment: C: Generating heatmaps of pre-selected candidate genes after deseq2
3.8 years ago by rodd ▴ 200
2
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0
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14k
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Answer: A: How To Separate Snp Variants From Indel Variants In The Same Vcf File
3.8 years ago by rodd ▴ 200
0
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0
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14k
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Comment: C: Filtering Imputation output: how to filter on a VCF INFO field
3.8 years ago by rodd ▴ 200
0
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0
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2.7k
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Answer: A: how to unzip Michigan imputation server output compressed folder
3.8 years ago by rodd ▴ 200
0
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0
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1.9k
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Comment: C: how to check if SNP falls in the exon region
3.9 years ago by rodd ▴ 200
0
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0
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8.8k
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Comment: C: deseq2 user defined size factors
3.9 years ago by rodd ▴ 200
0
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1
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8.8k
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Comment: C: deseq2 user defined size factors
3.9 years ago by rodd ▴ 200
0
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0
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23k
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Comment: C: How can I change the default path to which SRA files are downloaded?
4.1 years ago by rodd ▴ 200
0
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0
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9.7k
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Comment: C: download all samples from a study in BioProject
4.2 years ago by rodd ▴ 200
61 results • Page 1 of 2
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