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Answer: Answer: WGCNA package in R: dendogram plot error
8 months ago by rodd ▴ 220
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3
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591
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Brain cell type deconvolution
deconvolution RNA-seq cibersortx
updated 4 months ago by ▴ 290 • written 9 months ago by ▴ 220
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0
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587
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Comment: Comment: inverse normal transformation for gtex data
10 months ago by rodd ▴ 220
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1
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24k
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Comment: Comment: How to calculate effect(beta) and SE from z-score and p-value?
11 months ago by rodd ▴ 220
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1
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441
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Comment: Comment: Determining transcripts for repetitive elements in RNA-seq data
11 months ago by rodd ▴ 220
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3
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441
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Determining transcripts for repetitive elements in RNA-seq data
transcript rna-seq stringtie
updated 11 months ago by 12k • written 11 months ago by ▴ 220
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0
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24k
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Comment: Comment: How to calculate effect(beta) and SE from z-score and p-value?
2.2 years ago by rodd ▴ 220
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1
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4.4k
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Comment: Comment: PCAtools: everything Principal Components Analysis
2.3 years ago by rodd ▴ 220
2
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2
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1.6k
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Is there a FASTA file containing 1000 Genomes variant information to check reference alleles in VCF files?
checkvcf reference allele 1000 genomes
updated 2.7 years ago by 20 • written 4.3 years ago by ▴ 220
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8.9k
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Answer: A: How to get just protein_coding genes using biomart in R
2.9 years ago by rodd ▴ 220
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8.1k
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Comment: C: Obtaining rsIDs using BiomaRt or linux
2.9 years ago by rodd ▴ 220
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3
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1.2k
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Surrogate variables in eQTL studies
eqtl gtex covariates deseq2 sva
3.0 years ago by rodd ▴ 220
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1
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1.3k
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Answer: A: Best practices in eQTL analysis
3.1 years ago by rodd ▴ 220
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1
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1.2k
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Comment: C: Surrogate variables in eQTL studies
3.1 years ago by rodd ▴ 220
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0
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2.0k
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Comment: C: Covariates for eQTL analysis
3.1 years ago by rodd ▴ 220
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0
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1.8k
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Comment: C: RNAseq Normalization for eQTL Mapping?
3.1 years ago by rodd ▴ 220
13
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7
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20k
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trimming fastq files with Trimmomatic
QC RNA-Seq
updated 8 months ago by 40k • written 8.3 years ago by ▴ 220
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0
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19k
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Comment: C: How to get all genes for a specific list of regions in R preferably using Biomar
3.2 years ago by rodd ▴ 220
1
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1
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19k
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Comment: C: How to get all genes for a specific list of regions in R preferably using Biomar
3.2 years ago by rodd ▴ 220
0
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1
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39k
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Comment: C: Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
3.2 years ago by rodd ▴ 220
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0
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711
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Answer: A: Testing similarity between functional genomic annotations
3.7 years ago by rodd ▴ 220
3
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2
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711
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Testing similarity between functional genomic annotations
garfield functional genomics genomic annotations R
3.7 years ago by rodd ▴ 220
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0
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15k
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Comment: C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
3.9 years ago by rodd ▴ 220
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0
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17k
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Comment: C: filtering rRNA from fastq files or mapping results
3.9 years ago by rodd ▴ 220
0
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1
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15k
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Comment: C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
3.9 years ago by rodd ▴ 220
0
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1
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15k
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Comment: C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
3.9 years ago by rodd ▴ 220
0
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1
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15k
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Comment: C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
3.9 years ago by rodd ▴ 220
0
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1
reply
15k
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Comment: C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
3.9 years ago by rodd ▴ 220
1
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0
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8.1k
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Comment: Comment: WGCNA pearson or bicor? Also, should I adjust module correlation Pvalues by Bonf
8 months ago by rodd ▴ 220
0
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1
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8.1k
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Comment: C: WGCNA pearson or bicor? Also, should I adjust module correlation Pvalues by Bonf
3.9 years ago by rodd ▴ 220
0
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1
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8.1k
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Comment: C: WGCNA pearson or bicor? Also, should I adjust module correlation Pvalues by Bonf
3.9 years ago by rodd ▴ 220
11
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6
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1.3k
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Effect of gene size on WGCNA
wgcna gene size gene length deseq2
updated 3.9 years ago by 17k • written 3.9 years ago by ▴ 220
0
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0
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1.3k
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Comment: C: Effect of gene size on WGCNA
3.9 years ago by rodd ▴ 220
0
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1
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20k
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Comment: Comment: trimming fastq files with Trimmomatic
updated 8 months ago by 40k • written 8.3 years ago by ▴ 220
0
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0
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21k
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Comment: C: Lift-over on a VCF
4.0 years ago by rodd ▴ 220
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0
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21k
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Comment: C: Lift-over on a VCF
4.0 years ago by rodd ▴ 220
0
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0
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25k
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Comment: C: terminate called after throwing an instance of 'std::bad_alloc?
4.1 years ago by rodd ▴ 220
0
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1
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3.3k
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Comment: C: WGCNA error: "Error in cutreeDynamic"
4.1 years ago by rodd ▴ 220
1
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1
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12k
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Comment: C: Best Way To Quantify Influence Of Different Covariates On Gene Expression?
4.1 years ago by rodd ▴ 220
0
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0
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27k
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Comment: C: Converting SNP from chr:pos to rs number using PLINK?
4.1 years ago by rodd ▴ 220
1
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1
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27k
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Comment: C: Converting SNP from chr:pos to rs number using PLINK?
4.3 years ago by rodd ▴ 220
0
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1
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7.5k
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Comment: C: Generating heatmaps of pre-selected candidate genes after deseq2
4.3 years ago by rodd ▴ 220
2
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0
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15k
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Answer: A: How To Separate Snp Variants From Indel Variants In The Same Vcf File
4.3 years ago by rodd ▴ 220
0
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0
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16k
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Comment: C: Filtering Imputation output: how to filter on a VCF INFO field
4.3 years ago by rodd ▴ 220
0
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0
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3.0k
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Answer: A: how to unzip Michigan imputation server output compressed folder
4.3 years ago by rodd ▴ 220
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0
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2.0k
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Comment: C: how to check if SNP falls in the exon region
4.5 years ago by rodd ▴ 220
0
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0
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9.5k
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Comment: C: deseq2 user defined size factors
4.5 years ago by rodd ▴ 220
0
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1
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9.5k
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Comment: C: deseq2 user defined size factors
4.5 years ago by rodd ▴ 220
0
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0
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24k
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Comment: C: How can I change the default path to which SRA files are downloaded?
4.6 years ago by rodd ▴ 220
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0
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10k
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Comment: C: download all samples from a study in BioProject
4.7 years ago by rodd ▴ 220
61 results • Page 1 of 2
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