Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
11k
views
Answer: Answer: WGCNA package in R: dendogram plot error
16 months ago by rodd ▴ 230
1
vote
3
replies
844
views
Brain cell type deconvolution
deconvolution RNA-seq cibersortx
updated 12 months ago by ▴ 330 • written 17 months ago by ▴ 230
0
votes
0
replies
896
views
Comment: Comment: inverse normal transformation for gtex data
18 months ago by rodd ▴ 230
0
votes
1
reply
28k
views
Comment: Comment: How to calculate effect(beta) and SE from z-score and p-value?
18 months ago by rodd ▴ 230
0
votes
1
reply
638
views
Comment: Comment: Determining transcripts for repetitive elements in RNA-seq data
19 months ago by rodd ▴ 230
0
votes
3
replies
638
views
Determining transcripts for repetitive elements in RNA-seq data
transcript rna-seq stringtie
updated 19 months ago by 13k • written 19 months ago by ▴ 230
0
votes
0
replies
28k
views
Comment: Comment: How to calculate effect(beta) and SE from z-score and p-value?
2.8 years ago by rodd ▴ 230
0
votes
1
reply
5.1k
views
Comment: Comment: PCAtools: everything Principal Components Analysis
2.9 years ago by rodd ▴ 230
2
votes
2
replies
1.8k
views
Is there a FASTA file containing 1000 Genomes variant information to check reference alleles in VCF files?
checkvcf reference allele 1000 genomes
updated 3.3 years ago by 20 • written 4.9 years ago by ▴ 230
4
votes
1
reply
10k
views
Answer: A: How to get just protein_coding genes using biomart in R
3.5 years ago by rodd ▴ 230
0
votes
0
replies
9.0k
views
Comment: C: Obtaining rsIDs using BiomaRt or linux
3.5 years ago by rodd ▴ 230
1
vote
3
replies
1.4k
views
Surrogate variables in eQTL studies
eqtl gtex covariates deseq2 sva
3.6 years ago by rodd ▴ 230
3
votes
1
reply
1.4k
views
Answer: A: Best practices in eQTL analysis
3.7 years ago by rodd ▴ 230
0
votes
1
reply
1.4k
views
Comment: C: Surrogate variables in eQTL studies
3.7 years ago by rodd ▴ 230
0
votes
0
replies
2.4k
views
Comment: C: Covariates for eQTL analysis
3.7 years ago by rodd ▴ 230
0
votes
0
replies
2.0k
views
Comment: C: RNAseq Normalization for eQTL Mapping?
3.7 years ago by rodd ▴ 230
13
votes
7
replies
21k
views
trimming fastq files with Trimmomatic
QC RNA-Seq
updated 16 months ago by 43k • written 8.9 years ago by ▴ 230
0
votes
0
replies
20k
views
Comment: C: How to get all genes for a specific list of regions in R preferably using Biomar
3.8 years ago by rodd ▴ 230
1
vote
1
reply
20k
views
Comment: C: How to get all genes for a specific list of regions in R preferably using Biomar
3.8 years ago by rodd ▴ 230
0
votes
1
reply
46k
views
Comment: C: Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
3.8 years ago by rodd ▴ 230
0
votes
0
replies
840
views
Answer: A: Testing similarity between functional genomic annotations
4.3 years ago by rodd ▴ 230
3
votes
2
replies
840
views
Testing similarity between functional genomic annotations
garfield functional genomics genomic annotations R
4.3 years ago by rodd ▴ 230
1
vote
0
replies
18k
views
Comment: C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
4.5 years ago by rodd ▴ 230
0
votes
0
replies
17k
views
Comment: C: filtering rRNA from fastq files or mapping results
4.5 years ago by rodd ▴ 230
0
votes
1
reply
18k
views
Comment: C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
4.5 years ago by rodd ▴ 230
0
votes
1
reply
18k
views
Comment: C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
4.5 years ago by rodd ▴ 230
0
votes
1
reply
18k
views
Comment: C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
4.5 years ago by rodd ▴ 230
0
votes
1
reply
18k
views
Comment: C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
4.5 years ago by rodd ▴ 230
1
vote
0
replies
9.0k
views
Comment: Comment: WGCNA pearson or bicor? Also, should I adjust module correlation Pvalues by Bonf
15 months ago by rodd ▴ 230
0
votes
1
reply
9.0k
views
Comment: C: WGCNA pearson or bicor? Also, should I adjust module correlation Pvalues by Bonf
4.5 years ago by rodd ▴ 230
0
votes
1
reply
9.0k
views
Comment: C: WGCNA pearson or bicor? Also, should I adjust module correlation Pvalues by Bonf
4.5 years ago by rodd ▴ 230
11
votes
6
replies
1.5k
views
Effect of gene size on WGCNA
wgcna gene size gene length deseq2
updated 4.5 years ago by 19k • written 4.5 years ago by ▴ 230
0
votes
0
replies
1.5k
views
Comment: C: Effect of gene size on WGCNA
4.5 years ago by rodd ▴ 230
0
votes
1
reply
21k
views
Comment: Comment: trimming fastq files with Trimmomatic
updated 16 months ago by 43k • written 8.9 years ago by ▴ 230
0
votes
0
replies
23k
views
Comment: C: Lift-over on a VCF
4.6 years ago by rodd ▴ 230
0
votes
0
replies
23k
views
Comment: C: Lift-over on a VCF
4.6 years ago by rodd ▴ 230
0
votes
0
replies
29k
views
Comment: C: terminate called after throwing an instance of 'std::bad_alloc?
4.7 years ago by rodd ▴ 230
0
votes
1
reply
3.6k
views
Comment: C: WGCNA error: "Error in cutreeDynamic"
4.7 years ago by rodd ▴ 230
1
vote
1
reply
12k
views
Comment: C: Best Way To Quantify Influence Of Different Covariates On Gene Expression?
4.7 years ago by rodd ▴ 230
0
votes
0
replies
30k
views
Comment: C: Converting SNP from chr:pos to rs number using PLINK?
4.7 years ago by rodd ▴ 230
1
vote
1
reply
30k
views
Comment: C: Converting SNP from chr:pos to rs number using PLINK?
4.9 years ago by rodd ▴ 230
0
votes
1
reply
8.5k
views
Comment: C: Generating heatmaps of pre-selected candidate genes after deseq2
4.9 years ago by rodd ▴ 230
2
votes
0
replies
15k
views
Answer: A: How To Separate Snp Variants From Indel Variants In The Same Vcf File
4.9 years ago by rodd ▴ 230
0
votes
0
replies
17k
views
Comment: C: Filtering Imputation output: how to filter on a VCF INFO field
4.9 years ago by rodd ▴ 230
0
votes
0
replies
3.3k
views
Answer: A: how to unzip Michigan imputation server output compressed folder
5.0 years ago by rodd ▴ 230
0
votes
0
replies
2.2k
views
Comment: C: how to check if SNP falls in the exon region
5.1 years ago by rodd ▴ 230
0
votes
0
replies
10k
views
Comment: C: deseq2 user defined size factors
5.1 years ago by rodd ▴ 230
0
votes
1
reply
10k
views
Comment: C: deseq2 user defined size factors
5.1 years ago by rodd ▴ 230
0
votes
0
replies
25k
views
Comment: C: How can I change the default path to which SRA files are downloaded?
5.2 years ago by rodd ▴ 230
0
votes
0
replies
11k
views
Comment: C: download all samples from a study in BioProject
5.3 years ago by rodd ▴ 230
61 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6