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Answer: Answer: Biological replicates in RNA-seq
4 months ago by mark.ziemann ★ 1.8k
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1
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297
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Answer: Answer: clusterprofile enrichment analysis
4 months ago by mark.ziemann ★ 1.8k
3
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1
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640
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Answer: Answer: What exactly are unmappable regions?
8 months ago by mark.ziemann ★ 1.8k
2
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1
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1.1k
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Answer: Answer: gseGO by fold-change returns errors
8 months ago by mark.ziemann ★ 1.8k
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0
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556
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Answer: Answer: Combining multiple datasets increases the fgsea p-value
9 months ago by mark.ziemann ★ 1.8k
4
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0
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912
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Answer: Answer: How to create a new gene signature from RNAseq data
14 months ago by mark.ziemann ★ 1.8k
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1
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478
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Answer: Answer: Horizontal Gene Tranfer/Recombination
14 months ago by mark.ziemann ★ 1.8k
3
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1
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490
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Answer: Answer: Removing or Setting pairs to NA based on conditions in another data frame (R)
14 months ago by mark.ziemann ★ 1.8k
1
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1
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579
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Answer: Answer: sequence error
14 months ago by mark.ziemann ★ 1.8k
2
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0
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862
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Answer: Answer: GC content calculation in percentage
14 months ago by mark.ziemann ★ 1.8k
0
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0
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437
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Answer: Answer: Pathway Enrichment Analysis according to tumor mutation burden.
14 months ago by mark.ziemann ★ 1.8k
3
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2
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1.2k
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Answer: Answer: How can I do an inner_join with multiple .csv files on the linux command line?
14 months ago by mark.ziemann ★ 1.8k
2
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1
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556
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Answer: Answer: DNA sequencing from cord blood stem cells
14 months ago by mark.ziemann ★ 1.8k
2
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0
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393
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Answer: Answer: Accessing particular gene set with msigdbr on R
14 months ago by mark.ziemann ★ 1.8k
4
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1
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507
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Answer: Answer: Repeats/Transposons finding
14 months ago by mark.ziemann ★ 1.8k
0
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1
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452
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Answer: Answer: How to get gene expression data from list of gene
14 months ago by mark.ziemann ★ 1.8k
1
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0
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284
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Answer: Answer: Bacterial small-rna analysis
14 months ago by mark.ziemann ★ 1.8k
2
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0
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441
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Answer: Answer: GO Term Analysis in scRNASeq data with low number of genes expressed
14 months ago by mark.ziemann ★ 1.8k
1
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0
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370
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Answer: Answer: How to identify the genome build a dataset was aligned too?
14 months ago by mark.ziemann ★ 1.8k
0
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0
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999
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Answer: A: Number of replicates in each group in RNA seq
3.0 years ago by mark.ziemann ★ 1.8k
1
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0
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733
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Answer: A: CAST/EiJ mouse strain Reference Transcriptome (do we have one? if not, how to bu
3.0 years ago by mark.ziemann ★ 1.8k
0
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0
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1.2k
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Answer: A: Location of Genes on Chromosome
3.6 years ago by mark.ziemann ★ 1.8k
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1
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5.2k
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Answer: A: /bin/bash/ command not found
3.6 years ago by mark.ziemann ★ 1.8k
2
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1
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3.2k
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Answer: A: RNA seq with 2 biological replicates
3.6 years ago by mark.ziemann ★ 1.8k
1
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0
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1.2k
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Answer: A: Safe to convert entrez gene id to ensembl gene id
3.6 years ago by mark.ziemann ★ 1.8k
0
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0
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1.1k
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Answer: A: How to decide the parameters and parameter values when running ChIP-seq Peak Cal
3.6 years ago by mark.ziemann ★ 1.8k
2
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0
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537
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Answer: A: Primer Design Validation
3.6 years ago by mark.ziemann ★ 1.8k
6
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0
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24k
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Answer: A: BWA MEM Algorithm
updated 3.7 years ago by 40k • written 8.4 years ago by ★ 1.8k
1
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0
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1.6k
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Answer: A: Software to count gene loss in batch
updated 3.8 years ago by 40k • written 7.9 years ago by ★ 1.8k
0
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0
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2.8k
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Answer: A: Is there an online resource with freely available transcriptomes data from?
3.9 years ago by mark.ziemann ★ 1.8k
1
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0
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649
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Answer: A: Is BWT algorithm suitable for all types of alignment task?
3.9 years ago by mark.ziemann ★ 1.8k
1
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1
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2.8k
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Answer: A: How to discover new mutations in a derived strain relative to a reference genome
updated 3.9 years ago by 40k • written 8.2 years ago by ★ 1.8k
0
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0
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5.2k
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Answer: A: counting reads with featureCounts - uniquely assign reads to transcripts
updated 3.9 years ago by 40k • written 8.2 years ago by ★ 1.8k
2
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1
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2.4k
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Answer: Answer: Help simulating RRBS reads
updated 8 months ago by 40k • written 8.3 years ago by ★ 1.8k
1
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0
replies
14k
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Answer: A: Extracting specific FASTA sequences from a complex FASTA file
updated 4.0 years ago by 40k • written 8.6 years ago by ★ 1.8k
5
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1
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4.3k
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Answer: A: fgsea tutorial issue with BiocParallel
4.6 years ago by mark.ziemann ★ 1.8k
1
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0
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1.7k
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Answer: A: Meta-Analysis p-value combining and adjusting
5.0 years ago by mark.ziemann ★ 1.8k
0
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1
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1.2k
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Answer: A: Obtaining DEGs for bacterial RNA-sequencing study (levels of UV exposure)
5.6 years ago by mark.ziemann ★ 1.8k
2
votes
0
replies
3.1k
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Answer: A: Why do ribo-seq sequencing data have only a small proportion of uniquely mapped
5.9 years ago by mark.ziemann ★ 1.8k
2
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1
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3.1k
views
Answer: A: Why do ribo-seq sequencing data have only a small proportion of uniquely mapped
5.9 years ago by mark.ziemann ★ 1.8k
3
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0
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1.8k
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Answer: A: Looking for publicly available dataset.
5.9 years ago by mark.ziemann ★ 1.8k
2
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0
replies
1.8k
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Answer: A: Download ENCODE Project BED files using REST API
6.2 years ago by mark.ziemann ★ 1.8k
1
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1
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3.1k
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Answer: A: Bismark Methyl-Seq Analysis
6.2 years ago by mark.ziemann ★ 1.8k
2
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1
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1.5k
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Answer: A: Recommended program for evaluating aligner sensitivity
6.2 years ago by mark.ziemann ★ 1.8k
0
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0
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3.0k
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Answer: A: Total RNA-seq miRNA detection query
6.2 years ago by mark.ziemann ★ 1.8k
0
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0
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1.3k
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Answer: A: CNV tool for small sequences
6.2 years ago by mark.ziemann ★ 1.8k
3
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1
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2.6k
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Answer: A: Why does RNA sequencing data has Thymine as opposed to Uracil? Theoretically, it
6.2 years ago by mark.ziemann ★ 1.8k
4
votes
0
replies
5.4k
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Answer: A: An approach for gene ontology and up- / down-regulated genes (RNAseq)
7.2 years ago by mark.ziemann ★ 1.8k
3
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0
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9.1k
views
Answer: C: Problem with creating GSEA rank file
7.3 years ago by mark.ziemann ★ 1.8k
0
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1
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3.7k
views
Answer: A: DESeq without replicate nbinomTest method
7.4 years ago by mark.ziemann ★ 1.8k
102 results • Page 1 of 3
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