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Answer: Answer: GO Analysis Combine or Separate DEGs
9 months ago by mark.ziemann ★ 2.0k
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0
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653
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Answer: Answer: ChIP-seq signal across bed regions
9 months ago by mark.ziemann ★ 2.0k
2
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2
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2.0k
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Answer: Answer: Questions regarding GSEA - clusterProfiler
10 months ago by mark.ziemann ★ 2.0k
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0
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1.2k
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Answer: Answer: How to find GO function from GEO2R results
21 months ago by mark.ziemann ★ 2.0k
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1.1k
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Answer: Answer: transcriptomic data for molecular subtyping
21 months ago by mark.ziemann ★ 2.0k
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877
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Answer: Answer: Aneuploidy analysis from WGS
21 months ago by mark.ziemann ★ 2.0k
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2
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2.5k
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Answer: Answer: Geo2R troubleshooting
21 months ago by mark.ziemann ★ 2.0k
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1
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1.4k
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Answer: Answer: Simulation of gene level methylation data
21 months ago by mark.ziemann ★ 2.0k
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2.5k
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Answer: Answer: Methods to analyze EM-seq data
21 months ago by mark.ziemann ★ 2.0k
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0
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856
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Answer: Answer: mitch analysis report priority by standard deviation
21 months ago by mark.ziemann ★ 2.0k
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1
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977
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Answer: Answer: How to get differntial Protein expression from protein abundance?
21 months ago by mark.ziemann ★ 2.0k
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1.4k
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Answer: Answer: Biological replicates in RNA-seq
2.5 years ago by mark.ziemann ★ 2.0k
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1
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1.1k
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Answer: Answer: clusterprofile enrichment analysis
2.5 years ago by mark.ziemann ★ 2.0k
3
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1
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1.8k
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Answer: Answer: What exactly are unmappable regions?
2.8 years ago by mark.ziemann ★ 2.0k
3
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1
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3.5k
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Answer: Answer: gseGO by fold-change returns errors
2.8 years ago by mark.ziemann ★ 2.0k
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1.4k
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Answer: Answer: Combining multiple datasets increases the fgsea p-value
2.9 years ago by mark.ziemann ★ 2.0k
4
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0
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2.8k
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Answer: Answer: How to create a new gene signature from RNAseq data
3.3 years ago by mark.ziemann ★ 2.0k
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1
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1.1k
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Answer: Answer: Horizontal Gene Tranfer/Recombination
3.3 years ago by mark.ziemann ★ 2.0k
3
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1
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1.1k
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Answer: Answer: Removing or Setting pairs to NA based on conditions in another data frame (R)
3.3 years ago by mark.ziemann ★ 2.0k
1
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1
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1.3k
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Answer: Answer: sequence error
3.3 years ago by mark.ziemann ★ 2.0k
2
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0
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2.1k
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Answer: Answer: GC content calculation in percentage
3.3 years ago by mark.ziemann ★ 2.0k
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0
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1.0k
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Answer: Answer: Pathway Enrichment Analysis according to tumor mutation burden.
3.3 years ago by mark.ziemann ★ 2.0k
3
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2
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2.6k
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Answer: Answer: How can I do an inner_join with multiple .csv files on the linux command line?
3.3 years ago by mark.ziemann ★ 2.0k
2
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1
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1.5k
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Answer: Answer: DNA sequencing from cord blood stem cells
3.3 years ago by mark.ziemann ★ 2.0k
2
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1
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1.7k
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Answer: Answer: Accessing particular gene set with msigdbr on R
3.3 years ago by mark.ziemann ★ 2.0k
4
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1
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1.6k
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Answer: Answer: Repeats/Transposons finding
3.3 years ago by mark.ziemann ★ 2.0k
0
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1
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1.0k
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Answer: Answer: How to get gene expression data from list of gene
3.3 years ago by mark.ziemann ★ 2.0k
1
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0
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859
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Answer: Answer: Bacterial small-rna analysis
3.3 years ago by mark.ziemann ★ 2.0k
2
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0
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1.0k
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Answer: Answer: GO Term Analysis in scRNASeq data with low number of genes expressed
3.3 years ago by mark.ziemann ★ 2.0k
1
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0
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956
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Answer: Answer: How to identify the genome build a dataset was aligned too?
3.3 years ago by mark.ziemann ★ 2.0k
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0
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1.6k
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Answer: A: Number of replicates in each group in RNA seq
5.1 years ago by mark.ziemann ★ 2.0k
1
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0
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1.2k
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Answer: A: CAST/EiJ mouse strain Reference Transcriptome (do we have one? if not, how to bu
5.1 years ago by mark.ziemann ★ 2.0k
0
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0
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2.4k
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Answer: A: Location of Genes on Chromosome
5.8 years ago by mark.ziemann ★ 2.0k
0
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1
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7.7k
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Answer: A: /bin/bash/ command not found
5.8 years ago by mark.ziemann ★ 2.0k
2
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1
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6.2k
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Answer: A: RNA seq with 2 biological replicates
5.8 years ago by mark.ziemann ★ 2.0k
1
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0
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2.3k
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Answer: A: Safe to convert entrez gene id to ensembl gene id
5.8 years ago by mark.ziemann ★ 2.0k
0
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0
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2.2k
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Answer: A: How to decide the parameters and parameter values when running ChIP-seq Peak Cal
5.8 years ago by mark.ziemann ★ 2.0k
2
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0
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992
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Answer: A: Primer Design Validation
5.8 years ago by mark.ziemann ★ 2.0k
6
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0
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28k
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Answer: A: BWA MEM Algorithm
updated 5.8 years ago by 45k • written 10.5 years ago by ★ 2.0k
1
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0
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2.2k
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Answer: A: Software to count gene loss in batch
updated 6.0 years ago by 45k • written 10.0 years ago by ★ 2.0k
0
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0
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3.5k
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Answer: A: Is there an online resource with freely available transcriptomes data from?
6.0 years ago by mark.ziemann ★ 2.0k
1
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0
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1.2k
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Answer: A: Is BWT algorithm suitable for all types of alignment task?
6.0 years ago by mark.ziemann ★ 2.0k
1
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1
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4.0k
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Answer: A: How to discover new mutations in a derived strain relative to a reference genome
updated 6.0 years ago by 45k • written 10.3 years ago by ★ 2.0k
0
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0
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6.3k
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Answer: A: counting reads with featureCounts - uniquely assign reads to transcripts
updated 6.0 years ago by 45k • written 10.4 years ago by ★ 2.0k
2
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1
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3.2k
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Answer: Answer: Help simulating RRBS reads
updated 2.8 years ago by 45k • written 10.4 years ago by ★ 2.0k
1
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0
replies
17k
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Answer: A: Extracting specific FASTA sequences from a complex FASTA file
updated 6.1 years ago by 45k • written 10.7 years ago by ★ 2.0k
5
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2
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6.0k
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Answer: A: fgsea tutorial issue with BiocParallel
6.8 years ago by mark.ziemann ★ 2.0k
1
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0
replies
2.3k
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Answer: A: Meta-Analysis p-value combining and adjusting
7.2 years ago by mark.ziemann ★ 2.0k
0
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1
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1.8k
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Answer: A: Obtaining DEGs for bacterial RNA-sequencing study (levels of UV exposure)
7.7 years ago by mark.ziemann ★ 2.0k
2
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0
replies
4.0k
views
Answer: A: Why do ribo-seq sequencing data have only a small proportion of uniquely mapped
8.0 years ago by mark.ziemann ★ 2.0k
113 results • Page 1 of 3
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