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Answer: Answer: How do I create input files required by iGEAK (or find alternatives to iGEAK) fo
3.1 years ago by i.sudbery 22k
1
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1
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3.2k
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Comment: Comment: Multi factor analysis in DESeq2 and design formula
3.1 years ago by i.sudbery 22k
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3.2k
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Comment: Comment: Multi factor analysis in DESeq2 and design formula
3.1 years ago by i.sudbery 22k
1
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1
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3.2k
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Comment: Comment: Multi factor analysis in DESeq2 and design formula
3.1 years ago by i.sudbery 22k
5
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4.2k
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Answer: Answer: Should I merge my technical replicates for bulk RNA seq?
3.1 years ago by i.sudbery 22k
0
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0
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2.9k
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Comment: Comment: Multiple Testing Correction for GO Terms
3.1 years ago by i.sudbery 22k
1
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0
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1.5k
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Answer: Answer: How to iterate through paired-end reads in pysam?
3.1 years ago by i.sudbery 22k
1
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1
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2.8k
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Comment: Comment: How to pair TCGA bam files with no properly paired reads?
3.1 years ago by i.sudbery 22k
1
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1
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2.8k
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Comment: Comment: How to pair TCGA bam files with no properly paired reads?
3.2 years ago by i.sudbery 22k
3
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1
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4.7k
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Answer: Answer: Limma Differential Expression with Duplicate Correlation
3.2 years ago by i.sudbery 22k
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1.5k
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Comment: Comment: Issue with DESeq2 gene outlier detection when having multiple groups
3.2 years ago by i.sudbery 22k
0
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0
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695
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Comment: Comment: command line for umi_tools count_tab
3.2 years ago by i.sudbery 22k
1
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1.5k
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Answer: Answer: Issue with DESeq2 gene outlier detection when having multiple groups
3.2 years ago by i.sudbery 22k
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0
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1.9k
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Answer: Answer: Is low N in-vivo research a blind spot for RNA-seq?
3.2 years ago by i.sudbery 22k
0
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0
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862
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Answer: Answer: How do I filter out reads where Read 2 doesn't map to the end of a fasta sequenc
3.2 years ago by i.sudbery 22k
1
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0
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2.0k
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Comment: Comment: How to choose one TSS for every gene using Gencode annotation file?
3.2 years ago by i.sudbery 22k
2
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0
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1.3k
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Answer: Answer: Statistical exams in case of low replicate number in RNAseq analysis
3.2 years ago by i.sudbery 22k
1
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0
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1.5k
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Comment: Comment: Collecting samples from different studies for RNASeq analysis.
3.3 years ago by i.sudbery 22k
0
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1
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1.5k
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Comment: Comment: Collecting samples from different studies for RNASeq analysis.
3.3 years ago by i.sudbery 22k
0
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1
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1.5k
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Comment: Comment: Collecting samples from different studies for RNASeq analysis.
3.3 years ago by i.sudbery 22k
0
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0
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2.1k
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Comment: Comment: Gene types to use for RNA counts case-control
3.3 years ago by i.sudbery 22k
0
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0
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2.1k
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Comment: Comment: Gene types to use for RNA counts case-control
3.3 years ago by i.sudbery 22k
1
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2
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2.1k
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Comment: Comment: Gene types to use for RNA counts case-control
3.3 years ago by i.sudbery 22k
3
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2
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2.4k
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Answer: Answer: Fasta file is not converting properly to Indexed Fasta File
3.3 years ago by i.sudbery 22k
1
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2
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4.0k
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Comment: Comment: Why isn't GWAS used in oncology?
3.3 years ago by i.sudbery 22k
1
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0
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1.3k
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Answer: Answer: Is the promoter part of whole of gene in the UCSC database?
3.3 years ago by i.sudbery 22k
0
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1
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1.3k
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Comment: Comment: Is the promoter part of whole of gene in the UCSC database?
3.3 years ago by i.sudbery 22k
2
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0
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4.0k
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Comment: Comment: Why isn't GWAS used in oncology?
3.3 years ago by i.sudbery 22k
2
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0
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907
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Answer: Answer: A method to find if a variant is Genomic or an RNA-Editing variant
3.3 years ago by i.sudbery 22k
4
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0
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1.8k
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Answer: Answer: Modelling vs removing effects from confounding variables and their uses for down
3.3 years ago by i.sudbery 22k
1
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1
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1.2k
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Comment: Comment: Why a gene in UCSC has different positions?
3.3 years ago by i.sudbery 22k
2
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2
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2.9k
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Answer: Answer: Multiple Testing Correction for GO Terms
3.3 years ago by i.sudbery 22k
0
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0
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1.2k
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Answer: Answer: A question for using data in ENCODE polyA plus RNA-seq for exon level expression
3.3 years ago by i.sudbery 22k
1
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0
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2.8k
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Comment: Comment: DEXSeq - No Exon Counts
3.3 years ago by i.sudbery 22k
1
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1
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1.5k
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Comment: Comment: Differential Expression Analysis over time treatment
3.3 years ago by i.sudbery 22k
1
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0
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889
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Answer: Answer: What is retained from original vector construct/plasmid after RNA-sequencing?
3.3 years ago by i.sudbery 22k
0
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1
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1.5k
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Comment: Comment: Differential Expression Analysis over time treatment
3.3 years ago by i.sudbery 22k
2
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1
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1.5k
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Answer: Answer: Differential Expression Analysis over time treatment
3.3 years ago by i.sudbery 22k
1
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1
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2.4k
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Answer: Answer: Does RSEM ignore STAR's splice-aware nature?
3.3 years ago by i.sudbery 22k
0
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1
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2.5k
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Comment: Comment: CPTA, TCGA, RNA seq, validation
3.3 years ago by i.sudbery 22k
0
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0
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1.0k
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Comment: Comment: How do we guarantee a sample is sequenced to a given depth?
3.3 years ago by i.sudbery 22k
1
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1
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2.5k
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Answer: Answer: CPTA, TCGA, RNA seq, validation
3.3 years ago by i.sudbery 22k
0
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0
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2.5k
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Comment: Comment: Is there any journal article to reference removeBatchEffect function from Limma?
3.3 years ago by i.sudbery 22k
5
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1
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2.5k
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Answer: Answer: Is there any journal article to reference removeBatchEffect function from Limma?
3.3 years ago by i.sudbery 22k
6
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3
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5.0k
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Forum: Best formats for storing large amounts of data for random access
file-formats databases
updated 3.3 years ago by 5.1k • written 3.3 years ago by 22k
3
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1
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1.5k
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Answer: Answer: Biomart doe not convert between RefSeq and Ensembl Transcripts in GRCh37?
3.4 years ago by i.sudbery 22k
1
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0
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1.8k
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Answer: Answer: Multiple exposure timelines (time-points) in one DESeq2 object or multiple DESeq
3.4 years ago by i.sudbery 22k
1
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1
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2.5k
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Comment: Comment: Running salmon in alignment mode?
3.4 years ago by i.sudbery 22k
1
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0
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1.5k
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Answer: Answer: Crossing Wires with GTF files
3.4 years ago by i.sudbery 22k
0
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1
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2.5k
views
Comment: Comment: Running salmon in alignment mode?
3.4 years ago by i.sudbery 22k
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