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Answer: Answer: What are the columns from pysam fetch?
4.5 years ago by i.sudbery 22k
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Answer: Answer: Bam File Barcodes and UMIs not Formatted Correctly For Variant Calling
4.5 years ago by i.sudbery 22k
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Comment: Comment: microrna mRNA interactions search
4.5 years ago by i.sudbery 22k
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Answer: Answer: UMI deduplication after common sequence (QIAseq miRNA Library Kit)
4.5 years ago by i.sudbery 22k
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4.9k
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Comment: Comment: UMI deduplication after common sequence (QIAseq miRNA Library Kit)
4.5 years ago by i.sudbery 22k
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Comment: Comment: Consensus deduplication issues with non-matching/'slippy' primers?
4.5 years ago by i.sudbery 22k
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5.6k
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Comment: Comment: DESeq2 design for two variables and pairwise comparisons
4.5 years ago by i.sudbery 22k
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2.1k
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Comment: Comment: Consensus deduplication issues with non-matching/'slippy' primers?
4.6 years ago by i.sudbery 22k
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2.0k
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Comment: Comment: Use Rfam to remove contaminants from miRNA-seq
4.6 years ago by i.sudbery 22k
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2.0k
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Answer: Answer: Use Rfam to remove contaminants from miRNA-seq
4.6 years ago by i.sudbery 22k
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Answer: Answer: Consensus deduplication issues with non-matching/'slippy' primers?
4.6 years ago by i.sudbery 22k
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8.2k
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Comment: Comment: error in bowtie2 alignment
4.6 years ago by i.sudbery 22k
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1.4k
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Answer: Answer: How to get all microRNA target genes?
4.6 years ago by i.sudbery 22k
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2.3k
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Comment: Comment: microrna mRNA interactions search
4.6 years ago by i.sudbery 22k
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2.7k
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Comment: Comment: remove unmapped reads on a specific chromosome only
4.6 years ago by i.sudbery 22k
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2.7k
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Comment: Comment: remove unmapped reads on a specific chromosome only
4.6 years ago by i.sudbery 22k
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2.1k
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Comment: Comment: Using Statistical enrichment test for groups Principal Component Analysis
4.6 years ago by i.sudbery 22k
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2.1k
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Answer: Answer: Using Statistical enrichment test for groups Principal Component Analysis
4.6 years ago by i.sudbery 22k
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2.0k
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Comment: Comment: GTF format feature definitions
4.7 years ago by i.sudbery 22k
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2.0k
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Answer: Answer: GTF format feature definitions
4.7 years ago by i.sudbery 22k
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Comment: Comment: Finding ORFs from RNA-seq Sequence Data of eukaryotic species
4.7 years ago by i.sudbery 22k
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Comment: Comment: Bowtie2 & Hisat2 SAM flags above 256?
4.7 years ago by i.sudbery 22k
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3.0k
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Answer: Answer: Bowtie2 & Hisat2 SAM flags above 256?
4.7 years ago by i.sudbery 22k
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0
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838
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Job: Two postdocs (one wet, one dry) in 3' UTR biology and RNA threapeutics
rna machine-learning utr
4.7 years ago by i.sudbery 22k
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1.1k
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Answer: A: Seeking for siRNA screeing data analysis
4.7 years ago by i.sudbery 22k
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2.4k
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Comment: C: calculate statistically significant miRNA and mRNA target pairs using pearsons c
4.7 years ago by i.sudbery 22k
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2.4k
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Comment: C: calculate statistically significant miRNA and mRNA target pairs using pearsons c
4.7 years ago by i.sudbery 22k
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1
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2.4k
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Comment: C: calculate statistically significant miRNA and mRNA target pairs using pearsons c
4.7 years ago by i.sudbery 22k
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1
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2.4k
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Comment: C: calculate statistically significant miRNA and mRNA target pairs using pearsons c
4.7 years ago by i.sudbery 22k
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2.4k
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Answer: A: calculate statistically significant miRNA and mRNA target pairs using pearsons c
4.7 years ago by i.sudbery 22k
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3
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2.3k
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Answer: A: microrna mRNA interactions search
4.7 years ago by i.sudbery 22k
3
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1
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2.2k
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Answer: A: Does DESeq2 and EdgeR account for the increased total RNA production in one of t
4.7 years ago by i.sudbery 22k
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2.2k
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Comment: C: Does DESeq2 and EdgeR account for the increased total RNA production in one of t
4.7 years ago by i.sudbery 22k
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2.8k
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Comment: C: Getting standard 12-column format for a list of genes
4.7 years ago by i.sudbery 22k
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2.8k
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Answer: A: Getting standard 12-column format for a list of genes
4.7 years ago by i.sudbery 22k
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988
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Answer: A: Differences between codon usage bias vs. differential transcript usage (DTU)
4.7 years ago by i.sudbery 22k
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976
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Comment: C: Gene expression and chromatin state
4.7 years ago by i.sudbery 22k
2
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2.4k
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Answer: Answer: [RNA-seq] Extremely Unconsistent Raw Count from Different Tools; a dark mistery
4.7 years ago by i.sudbery 22k
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1
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1.0k
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Answer: A: CLIP enrichment analysis
4.7 years ago by i.sudbery 22k
6
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2
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29k
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Answer: A: Relation between Log2 Fold change and Log2 TPM in RNA-seq data
4.7 years ago by i.sudbery 22k
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29k
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Comment: C: Relation between Log2 Fold change and Log2 TPM in RNA-seq data
4.7 years ago by i.sudbery 22k
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2.4k
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Comment: C: umi_tools using regex greedy quantifiers only returning 1 character
4.7 years ago by i.sudbery 22k
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1
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2.4k
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Comment: C: umi_tools using regex greedy quantifiers only returning 1 character
4.7 years ago by i.sudbery 22k
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1.3k
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Answer: A: Comparing results from two different DESeq analyes
4.7 years ago by i.sudbery 22k
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1
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2.4k
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Comment: C: umi_tools using regex greedy quantifiers only returning 1 character
4.7 years ago by i.sudbery 22k
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0
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710
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Answer: A: RNA-seq DEGs downstream analysis and reporting in literature
4.7 years ago by i.sudbery 22k
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5.0k
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Comment: C: How to get REF and ALT alleles from a genotype data?
4.7 years ago by i.sudbery 22k
2
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1.2k
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Answer: A: BAM FLAG mate unmappedand mate reverse strand
4.7 years ago by i.sudbery 22k
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1
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5.0k
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Comment: C: How to get REF and ALT alleles from a genotype data?
4.7 years ago by i.sudbery 22k
1
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1
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1.5k
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Answer: A: is valid to apply several cut offs thresholds to a data-matrix used to perform c
4.7 years ago by i.sudbery 22k
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