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Comment: C: how to run Jupyter script on Slurm HPC
5.3 years ago by i.sudbery 22k
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8.7k
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Comment: C: how to run Jupyter script on Slurm HPC
5.3 years ago by i.sudbery 22k
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8.7k
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Answer: A: how to run Jupyter script on Slurm HPC
5.3 years ago by i.sudbery 22k
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1
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1.4k
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Comment: C: correlation pearson and spearman PValue
5.3 years ago by i.sudbery 22k
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3.1k
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Answer: C: Samtools faidx not printing reverse complement
5.3 years ago by i.sudbery 22k
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3.7k
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Comment: C: Adding a UMI tag to the UMI sequences in FASTQ files
5.3 years ago by i.sudbery 22k
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1.7k
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Comment: C: Too many RNAseq samples. What to do?
5.3 years ago by i.sudbery 22k
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811
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Answer: A: Limma Differential Expression RNASeq, please help
5.3 years ago by i.sudbery 22k
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1.7k
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Comment: C: Too many RNAseq samples. What to do?
5.3 years ago by i.sudbery 22k
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2
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1.6k
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Batch correct batch 2 while leaving batch 1 unchanged.
limma machine-learning batch-effect
updated 19 months ago by 45k • written 5.3 years ago by 22k
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1.6k
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Answer: A: Batch correct batch 2 while leaving batch 1 unchanged.
5.3 years ago by i.sudbery 22k
3
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1
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5.3k
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Answer: A: Small Sample Size (2 vs 3) in RNA-Seq DGE Shows Statistically Significant Result
5.3 years ago by i.sudbery 22k
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1.5k
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Answer: A: How to perform batch correction when we have only single condition?
5.3 years ago by i.sudbery 22k
2
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2
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3.7k
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Answer: A: Adding a UMI tag to the UMI sequences in FASTQ files
5.3 years ago by i.sudbery 22k
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0
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3.7k
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Comment: C: Adding a UMI tag to the UMI sequences in FASTQ files
5.3 years ago by i.sudbery 22k
1
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0
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4.6k
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Comment: C: Generate gene level TPM from quant.sf file generated in salmon
5.4 years ago by i.sudbery 22k
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1
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198k
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Comment: C: Fold change - a final explanation
5.4 years ago by i.sudbery 22k
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1.3k
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Comment: C: Split RNA Seq reads
5.4 years ago by i.sudbery 22k
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0
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2.3k
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Comment: C: Does BWA MEM understand paired-end suffixes? /2 in a single FASTQ file?
5.4 years ago by i.sudbery 22k
2
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1
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2.3k
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Answer: A: Does BWA MEM understand paired-end suffixes? /2 in a single FASTQ file?
5.4 years ago by i.sudbery 22k
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1.0k
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Answer: A: Tophat / output without XS
5.4 years ago by i.sudbery 22k
0
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1
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1.7k
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Comment: C: Using of GSEA to compare RNA seq data with published gene sets?
5.4 years ago by i.sudbery 22k
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1.7k
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Comment: C: Using of GSEA to compare RNA seq data with published gene sets?
5.4 years ago by i.sudbery 22k
1
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1
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3.0k
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Comment: C: Why does umi_tools dedup not write anything in the deduplicated.bam file?
5.4 years ago by i.sudbery 22k
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1
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3.0k
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Comment: C: Why does umi_tools dedup not write anything in the deduplicated.bam file?
5.4 years ago by i.sudbery 22k
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1
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4.5k
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Comment: C: Is there a tool to find the correct percentage of duplication levels in FastQ ?
5.4 years ago by i.sudbery 22k
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1
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3.0k
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Comment: C: Why does umi_tools dedup not write anything in the deduplicated.bam file?
5.4 years ago by i.sudbery 22k
1
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0
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977
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Selection of start codons in Ensembl
Ensembl Annotation Gene models
5.4 years ago by i.sudbery 22k
6
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2.2k
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Answer: A: What is the importance of the rlog function (DESeq2) for downstream analysis?
5.4 years ago by i.sudbery 22k
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2
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3.1k
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Comment: C: How can I count the number of UMIs and reads at each position after mapping with
5.4 years ago by i.sudbery 22k
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2
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3.1k
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Answer: A: How can I count the number of UMIs and reads at each position after mapping with
5.4 years ago by i.sudbery 22k
0
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1
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1.6k
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Answer: A: How to cut some part of the header of reads in FASTQ file?
5.4 years ago by i.sudbery 22k
0
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1
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7.1k
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Comment: C: tool to analysis bulk RNAseq data with UMIs
5.4 years ago by i.sudbery 22k
1
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0
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2.0k
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Comment: C: Requirement of constant variance in limma-voom
5.4 years ago by i.sudbery 22k
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1
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2.0k
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Comment: C: Requirement of constant variance in limma-voom
5.4 years ago by i.sudbery 22k
3
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1
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2.0k
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Answer: A: Requirement of constant variance in limma-voom
5.4 years ago by i.sudbery 22k
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0
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3.5k
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Comment: C: Is there a way to change gene_id in a GTF file where gene_id is actually a gene_
5.4 years ago by i.sudbery 22k
0
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1
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3.5k
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Comment: C: Is there a way to change gene_id in a GTF file where gene_id is actually a gene_
5.4 years ago by i.sudbery 22k
1
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1
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3.5k
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Comment: C: Best way to change gene_id in a GTF file where gene_id is identical to gene_name
5.4 years ago by i.sudbery 22k
4
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1
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3.4k
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Answer: A: How important is normalization for RNA_Seq data ?
5.4 years ago by i.sudbery 22k
3
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1
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5.9k
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Answer: A: Input vs IgG control for RIP-seq
5.4 years ago by i.sudbery 22k
0
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0
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921
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Answer: A: Where can I get both total RNA-seq & Chip-seq data,
5.4 years ago by i.sudbery 22k
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0
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1.8k
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Comment: C: How can I differentiate exogenous from endogenous transcripts in RNAseq data?
5.4 years ago by i.sudbery 22k
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0
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2.4k
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Comment: C: Do I have batch effect?
5.4 years ago by i.sudbery 22k
0
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1
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2.4k
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Comment: C: Do I have batch effect?
5.4 years ago by i.sudbery 22k
1
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1
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1.2k
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uORF annotation in Ensembl/GENCODE
Annotation Ensembl Gencode uORF
updated 5.4 years ago by 13k • written 5.4 years ago by 22k
1
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1
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2.4k
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Comment: C: Do I have batch effect?
5.4 years ago by i.sudbery 22k
2
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1
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2.4k
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Answer: A: Do I have batch effect?
5.4 years ago by i.sudbery 22k
0
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0
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979
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Comment: C: Deposition of small sets of human fastqs
5.4 years ago by i.sudbery 22k
0
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2
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979
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Deposition of small sets of human fastqs
ethics data submission
5.4 years ago by i.sudbery 22k
1,728 results • Page 21 of 35
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