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3.0k
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Comment: C: Pysam pileup dropping reads
5.7 years ago by i.sudbery 22k
0
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1
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3.0k
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Comment: C: Pysam pileup dropping reads
5.7 years ago by i.sudbery 22k
3
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0
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17k
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Answer: C: Deseq error : ncol(countData) == nrow(colData) is not TRUE
5.7 years ago by i.sudbery 22k
0
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1
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1.4k
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Answer: A: Deseq2 design. Control, siRNA knockdown and scramble siRNA
5.7 years ago by i.sudbery 22k
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3
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2.3k
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Answer: A: Can I use deseq on non transcriptome data?
5.7 years ago by i.sudbery 22k
1
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1
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6.6k
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Answer: A: How to analyze the RNAseq paired samples with DESeq2?
5.7 years ago by i.sudbery 22k
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0
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796
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Comment: C: Metagenomics Analysis pipeline for Illumina paired end Sequences
5.7 years ago by i.sudbery 22k
2
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2.8k
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Answer: A: Remove duplicate reads before variant calling?
5.7 years ago by i.sudbery 22k
0
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0
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1.7k
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Comment: C: Would curated pathway gene set better being weighted than being binary
5.7 years ago by i.sudbery 22k
1
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0
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1.2k
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Answer: A: getting different number of reads in R1 and R2 after using UMItools
5.7 years ago by i.sudbery 22k
2
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1
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2.8k
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Answer: A: Statistical tests for NGS profile/enrichment plots
5.7 years ago by i.sudbery 22k
0
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0
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1.9k
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Comment: C: SAMTools file has too many barcodes
5.7 years ago by i.sudbery 22k
1
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0
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2.0k
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Comment: C: Normalization of NGS data generated from different platforms of microRNAs
5.7 years ago by i.sudbery 22k
2
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1
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2.0k
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Answer: A: Normalization of NGS data generated from different platforms of microRNAs
5.7 years ago by i.sudbery 22k
0
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0
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1.3k
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Comment: C: Is this workflow for Mir-seq data correct ?
5.8 years ago by i.sudbery 22k
0
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1
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1.3k
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Comment: C: Is this workflow for Mir-seq data correct ?
5.8 years ago by i.sudbery 22k
6
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2
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4.7k
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Answer: C: Bulk RNA-Seq pipeline suggestion incorporating UMIs
5.8 years ago by i.sudbery 22k
0
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1
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4.7k
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Comment: C: Bulk RNA-Seq pipeline suggestion incorporating UMIs
5.8 years ago by i.sudbery 22k
0
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1
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4.7k
views
Comment: C: Bulk RNA-Seq pipeline suggestion incorporating UMIs
5.8 years ago by i.sudbery 22k
3
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0
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14k
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Answer: A: Saving high quality image in R
5.8 years ago by i.sudbery 22k
0
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1
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6.1k
views
Comment: C: STAR aligner very slow for human genome index generation
5.8 years ago by i.sudbery 22k
0
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1
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6.1k
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Answer: A: STAR aligner very slow for human genome index generation
5.8 years ago by i.sudbery 22k
2
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2
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5.7k
views
Answer: C: Error when running cellranger mkref single nuclei RNA-Seq
5.8 years ago by i.sudbery 22k
0
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1
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1.1k
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Comment: C: How I can get the UMI extraction file
5.8 years ago by i.sudbery 22k
0
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0
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2.9k
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Answer: A: Trying to extract gene_type from GeneCode GTF file
5.8 years ago by i.sudbery 22k
0
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0
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4.5k
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Comment: C: problem in install UMI_tools
5.8 years ago by i.sudbery 22k
1
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0
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2.7k
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Comment: C: Useful productivity tools for bioinformaticians
5.8 years ago by i.sudbery 22k
0
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0
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4.7k
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Comment: C: Is it appropriate to use counts = counts + 1 when using DESeq2 on scRNAseq data?
5.8 years ago by i.sudbery 22k
1
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1
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4.5k
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Comment: C: problem in install UMI_tools
updated 5.8 years ago by 48k • written 5.8 years ago by 22k
2
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2
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3.4k
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Answer: A: How can both pairs in paired-end sequencing data be aligned to the forward stran
5.8 years ago by i.sudbery 22k
0
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0
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3.6k
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Comment: C: Different results from featureCounts using gene_id and gene_biotype
5.8 years ago by i.sudbery 22k
0
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1
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3.6k
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Answer: A: Different results from featureCounts using gene_id and gene_biotype
5.8 years ago by i.sudbery 22k
0
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0
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2.7k
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Comment: C: Correlation of two ChIP-seq signals?
5.8 years ago by i.sudbery 22k
0
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1
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2.7k
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Comment: C: Correlation of two ChIP-seq signals?
5.8 years ago by i.sudbery 22k
1
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0
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1.6k
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Answer: A: mRNA, ceRNA, miRNA network database
5.8 years ago by i.sudbery 22k
1
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0
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1.2k
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Comment: C: Finding of essential genes using database
5.8 years ago by i.sudbery 22k
0
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0
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3.7k
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Comment: C: FeatureCounts for miRNAseq
5.8 years ago by i.sudbery 22k
1
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1
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3.7k
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Comment: C: FeatureCounts for miRNAseq
5.8 years ago by i.sudbery 22k
0
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0
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2.7k
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Comment: C: DESeq model design
5.9 years ago by i.sudbery 22k
0
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0
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1.2k
views
Comment: C: RNA seq and Invitro data not matching
5.9 years ago by i.sudbery 22k
1
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1
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1.2k
views
Answer: A: RNA seq and Invitro data not matching
5.9 years ago by i.sudbery 22k
4
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1
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2.7k
views
Rename Tag in BAM file
bam
updated 9 months ago by 166k • written 5.9 years ago by 22k
0
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0
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2.7k
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Comment: C: db-GaP / GTEx analysis on the cloud. Easiest way?
5.9 years ago by i.sudbery 22k
1
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2
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2.7k
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Answer: A: db-GaP / GTEx analysis on the cloud. Easiest way?
5.9 years ago by i.sudbery 22k
1
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0
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2.3k
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Comment: C: Effect of gene size on WGCNA
5.9 years ago by i.sudbery 22k
3
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0
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1.3k
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Answer: A: is there any database that show RNA false positive?
5.9 years ago by i.sudbery 22k
0
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0
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2.9k
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Comment: C: What aligners to choose between Hisat2 and BWA for chip-SEQ analysis
5.9 years ago by i.sudbery 22k
1
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0
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3.1k
views
Answer: A: relevance of GSEA on Nanostring ncounter gene expression data ?
5.9 years ago by i.sudbery 22k
0
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0
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2.3k
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Comment: C: Effect of gene size on WGCNA
5.9 years ago by i.sudbery 22k
2
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2
replies
2.3k
views
Answer: A: Effect of gene size on WGCNA
5.9 years ago by i.sudbery 22k
1,719 results • Page 24 of 35
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