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Answer: Answer: I want to correct the erroneous barcode file, and the Python code that I've writ
2.6 years ago by i.sudbery 22k
1
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1
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8.5k
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Comment: Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
2.6 years ago by i.sudbery 22k
13
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0
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1.9k
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Answer: Answer: Pooling animal samples to a lower number of replicates vs. sequencing a subgroup
2.6 years ago by i.sudbery 22k
1
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1
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1.5k
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Answer: Answer: Why can’t we have full-length transcripts with droplet-based technologies ?
2.6 years ago by i.sudbery 22k
1
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0
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905
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Comment: Comment: in an RNA-seq experiment, what threshold would you use to define a set of expres
2.7 years ago by i.sudbery 22k
1
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1
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2.0k
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Comment: Comment: PCA in gene expression
2.7 years ago by i.sudbery 22k
2
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1
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2.0k
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Answer: Answer: PCA in gene expression
2.7 years ago by i.sudbery 22k
0
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2.0k
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Comment: Comment: PCA in gene expression
2.7 years ago by i.sudbery 22k
0
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0
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2.9k
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Answer: Answer: Benjamini–Hochberg correction, FDR in genes' expressions
2.7 years ago by i.sudbery 22k
2
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0
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4.9k
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Answer: Answer: gtf2bed not converting to bed
2.7 years ago by i.sudbery 22k
0
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0
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2.0k
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Comment: Comment: How to get human cDNA sequences together with UTR regions?
2.7 years ago by i.sudbery 22k
0
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0
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2.0k
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Comment: Comment: How to get human cDNA sequences together with UTR regions?
2.7 years ago by i.sudbery 22k
1
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0
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2.7k
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Comment: Comment: I can not allocate ram memory for WSL2
2.7 years ago by i.sudbery 22k
0
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1
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1.9k
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Comment: Comment: Tissue-dependent usage of exons
2.7 years ago by i.sudbery 22k
0
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1
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1.9k
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Comment: Comment: Tissue-dependent usage of exons
2.7 years ago by i.sudbery 22k
0
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1
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1.9k
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Answer: Answer: Tissue-dependent usage of exons
2.7 years ago by i.sudbery 22k
2
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1
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1.0k
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Answer: Answer: Could I consider an ENCODE experiment with two library as two replicates for dif
2.7 years ago by i.sudbery 22k
3
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0
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5.7k
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Answer: Answer: Discrepancy between Log2(x) and Log2(x+1) regarding Log2FC
2.7 years ago by i.sudbery 22k
6
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1
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2.0k
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Answer: Answer: kallisto -s o error
2.7 years ago by i.sudbery 22k
0
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1
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1.6k
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Comment: Comment: How to cut some part of the header of reads in FASTQ file?
2.7 years ago by i.sudbery 22k
2
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0
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2.5k
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Comment: Comment: 1 is not found in chromosome sizes file
2.7 years ago by i.sudbery 22k
0
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1
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2.5k
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Answer: Answer: Problem with universe argument in enrichKEGG
2.7 years ago by i.sudbery 22k
0
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0
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2.4k
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Comment: Comment: Should I use TPM or TMM to plot gene expression boxplots in RNAseq?
2.7 years ago by i.sudbery 22k
0
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1
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2.4k
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Comment: Comment: Should I use TPM or TMM to plot gene expression boxplots in RNAseq?
2.7 years ago by i.sudbery 22k
0
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1
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2.4k
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Comment: Comment: Should I use TPM or TMM to plot gene expression boxplots in RNAseq?
2.7 years ago by i.sudbery 22k
3
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1
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1.4k
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Answer: Answer: Differential expression vs tissue specific expression
2.7 years ago by i.sudbery 22k
0
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0
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14k
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Comment: Comment: How to choose Normalization methods (TPM/RPKM/FPKM) for mRNA expression
2.7 years ago by i.sudbery 22k
0
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0
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14k
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Comment: Comment: How to choose Normalization methods (TPM/RPKM/FPKM) for mRNA expression
2.7 years ago by i.sudbery 22k
0
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1
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14k
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Comment: Comment: How to choose Normalization methods (TPM/RPKM/FPKM) for mRNA expression
updated 2.7 years ago by 45k • written 2.7 years ago by 22k
0
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2
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14k
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Comment: Comment: How to choose Normalization methods (TPM/RPKM/FPKM) for mRNA expression
2.7 years ago by i.sudbery 22k
0
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1
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14k
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Comment: Comment: How to choose Normalization methods (TPM/RPKM/FPKM) for mRNA expression
2.7 years ago by i.sudbery 22k
8
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1
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14k
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Answer: Answer: How to choose Normalization methods (TPM/RPKM/FPKM) for mRNA expression
2.7 years ago by i.sudbery 22k
2
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0
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2.3k
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Comment: Comment: Salmon TPM calculation constant
2.7 years ago by i.sudbery 22k
1
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0
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2.1k
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Answer: Answer: Comparing log2-fold changes to find elements with virtually the same log2-fold c
2.7 years ago by i.sudbery 22k
1
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1
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1.1k
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Answer: Answer: how to decide the if the IDR result is good or not
2.7 years ago by i.sudbery 22k
6
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0
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2.0k
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Answer: Answer: Can FPKM data sets be of any use or are they trash?
2.7 years ago by i.sudbery 22k
1
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0
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1.2k
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Comment: Comment: Gene expression normalization sample-wise or feature-wise? which one is the reco
2.7 years ago by i.sudbery 22k
0
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0
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1.4k
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Comment: Comment: logFC is negative, need help to get it done
2.7 years ago by i.sudbery 22k
0
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1
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2.6k
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Comment: Comment: Modeling RNAseq batch effects using a non-case/control technical replicate
2.8 years ago by i.sudbery 22k
1
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1
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2.0k
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Comment: Comment: How should I deduce the variable from its variance and expectation in the `voom`
2.8 years ago by i.sudbery 22k
1
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0
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2.0k
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Comment: Comment: How should I deduce the variable from its variance and expectation in the `voom`
2.8 years ago by i.sudbery 22k
0
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1
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2.6k
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Comment: Comment: Modeling RNAseq batch effects using a non-case/control technical replicate
2.8 years ago by i.sudbery 22k
0
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0
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774
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Comment: Comment: Gene coverage issue in HG38
2.8 years ago by i.sudbery 22k
3
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1
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2.1k
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Answer: Answer: Do I need to adjust the pvalue if I am only going to test one gene from omics da
2.8 years ago by i.sudbery 22k
0
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0
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1.6k
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Comment: Comment: How to summarize the expression of a gene when having expression data from diffe
2.8 years ago by i.sudbery 22k
3
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2
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4.1k
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Comment: Comment: RNA Editing data from RNA-seq
2.8 years ago by i.sudbery 22k
1
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1
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1.7k
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Comment: Comment: How to find the most frequent alternative-splicing event from DEXSEQ data?
2.8 years ago by i.sudbery 22k
0
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0
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1.7k
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Comment: Comment: DESeq2 results function runs very slow on Windows 10
2.8 years ago by i.sudbery 22k
1
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1
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4.1k
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Comment: Comment: RNA Editing data from RNA-seq
2.8 years ago by i.sudbery 22k
1
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1
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1.7k
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Comment: Comment: How to find the most frequent alternative-splicing event from DEXSEQ data?
2.8 years ago by i.sudbery 22k
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