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Answer: Answer: Do batches contain biological variations in omics data (RNAseq or scRNAseq)?
updated 4 months ago by 43k • written 4 months ago by 19k
3
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1
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900
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Answer: Answer: installing DESeq2 on Windows
4 months ago by i.sudbery 19k
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1.9k
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Comment: Comment: What apps can read large FASTQ files on Windows?
5 months ago by i.sudbery 19k
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1.9k
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Answer: Answer: What apps can read large FASTQ files on Windows?
5 months ago by i.sudbery 19k
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1
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575
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Answer: Answer: Best method for batch correction of three datasets
updated 5 months ago by 82k • written 5 months ago by 19k
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890
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Comment: Comment: p-value combination methods
5 months ago by i.sudbery 19k
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1
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890
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Comment: Comment: p-value combination methods
5 months ago by i.sudbery 19k
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0
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377
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Answer: Answer: multiple condition and time course in RNA-seq
5 months ago by i.sudbery 19k
2
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1
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828
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Comment: Comment: Downstream analysis with DEseq2 normalization
6 months ago by i.sudbery 19k
2
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0
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647
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Answer: Answer: Does DESeq2 correct for library size when importing the counts with DESeqDataSet
6 months ago by i.sudbery 19k
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0
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939
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Comment: Comment: Command line or python RNA-seq read simulator
6 months ago by i.sudbery 19k
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0
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939
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Comment: Comment: Command line or python RNA-seq read simulator
6 months ago by i.sudbery 19k
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0
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939
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Comment: Comment: Command line or python RNA-seq read simulator
6 months ago by i.sudbery 19k
1
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1
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1.3k
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Comment: Comment: Is my data too noisy for DESeq? Should I model noise as unwanted variation?
6 months ago by i.sudbery 19k
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2
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939
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Comment: Comment: Command line or python RNA-seq read simulator
6 months ago by i.sudbery 19k
1
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9
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939
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Command line or python RNA-seq read simulator
simulation RNA-seq
6 months ago by i.sudbery 19k
3
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1
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1.3k
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Answer: Answer: Is my data too noisy for DESeq? Should I model noise as unwanted variation?
6 months ago by i.sudbery 19k
0
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1
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1.3k
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Comment: Comment: Is my data too noisy for DESeq? Should I model noise as unwanted variation?
6 months ago by i.sudbery 19k
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0
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564
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Comment: Comment: Cross validate RNA-seq and ATAC-seq
6 months ago by i.sudbery 19k
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0
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673
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Comment: Comment: Why my GWAS p-value QQ-plot is far above diagonal
7 months ago by i.sudbery 19k
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4
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1.4k
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Answer: Answer: Dealing with transcriptome sequences that are smaller than their respective gene
8 months ago by i.sudbery 19k
3
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1
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1.7k
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Answer: Answer: Annotating TSS: By Transcript or by Gene? Code Validation Help Needed!
8 months ago by i.sudbery 19k
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1
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655
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Comment: Comment: What is "intersectional genetic strategy"? How does it work? What can it do?
8 months ago by i.sudbery 19k
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1
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795
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Answer: Answer: From where can I obtain vcf files of healthy exomes
8 months ago by i.sudbery 19k
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0
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1.5k
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Answer: Answer: Is Bioinformatics a Professional Degree?
8 months ago by i.sudbery 19k
4
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1
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1.2k
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Answer: Answer: Can one sample t.test be used to determine statistical significance for log2FC v
8 months ago by i.sudbery 19k
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0
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1.4k
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Comment: Comment: Formatting RNA-Seq Data for Kruskal Wallis Test on R
8 months ago by i.sudbery 19k
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0
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965
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Comment: Comment: Understaning the result of Meta-analysis of differential expression across datas
8 months ago by i.sudbery 19k
0
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1
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965
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Comment: Comment: Understaning the result of Meta-analysis of differential expression across datas
8 months ago by i.sudbery 19k
0
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1
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965
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Answer: Answer: Understaning the result of Meta-analysis of differential expression across datas
8 months ago by i.sudbery 19k
0
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1
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965
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Comment: Comment: Understaning the result of Meta-analysis of differential expression across datas
8 months ago by i.sudbery 19k
0
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1
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965
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Comment: Comment: Understaning the result of Meta-analysis of differential expression across datas
8 months ago by i.sudbery 19k
2
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2
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960
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Answer: Answer: RSEM uses different gene lengths for each sample.
9 months ago by i.sudbery 19k
1
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0
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1.8k
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Comment: Comment: UMI deduplication and output
9 months ago by i.sudbery 19k
1
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1
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887
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Comment: Comment: Should we assume UMI-based scRNAseq data is not compositional?
9 months ago by i.sudbery 19k
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1
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887
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Comment: Comment: Should we assume UMI-based scRNAseq data is not compositional?
9 months ago by i.sudbery 19k
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0
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1.0k
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Comment: Comment: Umi dedup with fastp
9 months ago by i.sudbery 19k
0
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1
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741
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Answer: Answer: Quantification of allele-specific gene expression in RNA-seq
9 months ago by i.sudbery 19k
3
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1
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579
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Comment: Comment: Optimal Over Representation Analysis DE genes foldFC threshold?
9 months ago by i.sudbery 19k
0
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1
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1.0k
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Answer: Answer: Umi dedup with fastp
9 months ago by i.sudbery 19k
0
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0
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1.2k
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Comment: Comment: losing many genes while doing DGE on the RNAseq data due to read count threshold
10 months ago by i.sudbery 19k
2
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0
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2.0k
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Answer: Answer: Don't choose Novogene for your sequencing projects
10 months ago by i.sudbery 19k
1
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1
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1.2k
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Answer: Answer: losing many genes while doing DGE on the RNAseq data due to read count threshold
10 months ago by i.sudbery 19k
2
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1
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1.3k
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Answer: Answer: How to allocate memory and CPU without SLURM in a linux cluster?
10 months ago by i.sudbery 19k
2
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0
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800
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Comment: Comment: correlation plot, FDR value
10 months ago by i.sudbery 19k
0
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1
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800
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Answer: Answer: correlation plot, FDR value
10 months ago by i.sudbery 19k
3
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1
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1.0k
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Answer: Answer: How reproducible is transcript quantification through salmon?
10 months ago by i.sudbery 19k
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1
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1.2k
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Comment: Comment: Is it possible to use salmon alevin tool for total rna seq samples?
11 months ago by i.sudbery 19k
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1
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1.2k
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Answer: Answer: Is it possible to use salmon alevin tool for total rna seq samples?
11 months ago by i.sudbery 19k
0
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0
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478
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Answer: Answer: Making use of relative density of genomic features between gene sets
11 months ago by i.sudbery 19k
1,507 results • Page 3 of 31
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