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Comment: C: RNA-SeQC error no output
updated 3.2 years ago by 38k • written 7.9 years ago by ▴ 350
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0
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7.8k
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Comment: C: featureCounts isoform vs gene summarization
updated 3.3 years ago by 38k • written 7.3 years ago by ▴ 350
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1
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7.8k
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Answer: A: featureCounts isoform vs gene summarization
updated 3.3 years ago by 38k • written 7.3 years ago by ▴ 350
5
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0
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11k
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Answer: A: featureCounts exon counting problem
updated 3.3 years ago by 38k • written 7.3 years ago by ▴ 350
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0
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5.5k
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Answer: A: questions about TruSeq Adapter
updated 3.3 years ago by 38k • written 7.4 years ago by ▴ 350
1
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1
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4.1k
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Answer: A: txt file to bigwig
updated 3.3 years ago by 38k • written 7.4 years ago by ▴ 350
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3.1k
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Answer: Answer: Splicing programs to find alternative polyadenylation
updated 11 months ago by 38k • written 7.4 years ago by ▴ 350
2
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0
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4.1k
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Comment: C: txt file to bigwig
updated 3.3 years ago by 38k • written 7.4 years ago by ▴ 350
0
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1
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4.7k
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Comment: C: GFFutils very slow at creating database file. Any Idea why..?
updated 3.4 years ago by 38k • written 7.6 years ago by ▴ 350
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0
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4.7k
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Comment: C: GFFutils very slow at creating database file. Any Idea why..?
updated 3.4 years ago by 38k • written 7.6 years ago by ▴ 350
0
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0
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4.7k
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Comment: C: GFFutils very slow at creating database file. Any Idea why..?
updated 3.4 years ago by 38k • written 7.6 years ago by ▴ 350
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0
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3.6k
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Comment: C: Assembling a chromosome for an E. coli strain using contigs/scaffolds from two W
updated 3.4 years ago by 38k • written 7.7 years ago by ▴ 350
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1
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2.4k
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Answer: A: RNASeqQC - Low number of genes detected on run
updated 3.4 years ago by 38k • written 7.8 years ago by ▴ 350
0
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1
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2.3k
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Comment: C: mm9 RNA-seq reference genome
4.5 years ago by Kirill Tsyganov ▴ 350
1
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0
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2.9k
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Comment: C: How to create PCA plot and heatmaps using only significant genes in edgeR ?
4.5 years ago by Kirill Tsyganov ▴ 350
2
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0
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2.0k
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Comment: C: EdgeR analysis with different biological replicates numbers problem
4.5 years ago by Kirill Tsyganov ▴ 350
17
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11
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14k
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SAMtools mpileup and bcftools doesn't call InDels...
SNP INDELs samtools-mpileup variant-calling
updated 3 months ago by 38k • written 7.7 years ago by ▴ 350
0
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0
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14k
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Comment: C: SAMtools mpileup and bcftools doesn't call InDels...
6.0 years ago by Kirill Tsyganov ▴ 350
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0
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1.6k
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Comment: C: Observed and expected fastq header count different when merging two fastq files
7.4 years ago by Kirill Tsyganov ▴ 350
0
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1
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4.7k
views
Comment: Comment: GFFutils very slow at creating database file. Any Idea why..?
updated 5 months ago by 38k • written 7.6 years ago by ▴ 350
2
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10
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4.7k
views
GFFutils very slow at creating database file. Any Idea why..?
gffutils gff
updated 4 months ago by 38k • written 7.6 years ago by ▴ 350
0
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1
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4.7k
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Comment: Comment: GFFutils very slow at creating database file. Any Idea why..?
updated 4 months ago by 38k • written 7.6 years ago by ▴ 350
0
votes
1
reply
14k
views
Comment: C: SAMtools mpileup and bcftools doesn't call InDels...
7.7 years ago by Kirill Tsyganov ▴ 350
0
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1
reply
14k
views
Comment: Comment: SAMtools mpileup and bcftools doesn't call InDels...
updated 3 months ago by 38k • written 7.7 years ago by ▴ 350
0
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0
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6.0k
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Comment: Comment: Error in SNP calling using samtools and bcftools
updated 3 months ago by 38k • written 7.7 years ago by ▴ 350
0
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0
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2.0k
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Comment: Comment: Where to get human 3'-UTR multiple sequence alignment ?
updated 3 months ago by 38k • written 7.7 years ago by ▴ 350
0
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1
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2.1k
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Comment: Comment: Reporting alleles sequences for Amplicon sequencing after variant calling
updated 3 months ago by 38k • written 7.8 years ago by ▴ 350
0
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0
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2.4k
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Comment: Comment: RNASeqQC - Low number of genes detected on run
updated 11 weeks ago by 38k • written 7.8 years ago by ▴ 350
0
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0
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3.6k
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Comment: C: How do I load more than 200 nucleotide EST sequences into fasta files from NCBI
7.8 years ago by Kirill Tsyganov ▴ 350
0
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1
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3.6k
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Comment: Comment: How do I load more than 200 nucleotide EST sequences into fasta files from NCBI
updated 11 weeks ago by 38k • written 7.8 years ago by ▴ 350
0
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1
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3.2k
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Comment: Comment: BWA-mem read mapping depends on chromosome order
updated 11 weeks ago by 38k • written 7.8 years ago by ▴ 350
1
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1
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3.6k
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Comment: C: How do I load more than 200 nucleotide EST sequences into fasta files from NCBI
7.8 years ago by Kirill Tsyganov ▴ 350
0
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0
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3.7k
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Comment: Comment: Obtaining sequence from Bioproject IDs using biopython gives unknown sequence
updated 10 weeks ago by 38k • written 7.8 years ago by ▴ 350
0
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1
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3.7k
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Answer: Answer: Obtaining sequence from Bioproject IDs using biopython gives unknown sequence
updated 10 weeks ago by 38k • written 7.8 years ago by ▴ 350
0
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0
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7.4k
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Comment: Comment: Samtools mpileup quality scores all zero
updated 10 weeks ago by 38k • written 7.8 years ago by ▴ 350
3
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2
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7.4k
views
Answer: Answer: Samtools mpileup quality scores all zero
updated 10 weeks ago by 38k • written 7.8 years ago by ▴ 350
2
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1
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6.0k
views
Answer: Answer: Where to Download & File Format of Reference Gene Annotation for C. elegans WS22
updated 6 months ago by 38k • written 7.8 years ago by ▴ 350
0
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0
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4.1k
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Comment: Comment: How to annotate a VCF with Entrez Gene IDs
updated 10 weeks ago by 38k • written 7.8 years ago by ▴ 350
0
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0
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2.5k
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Comment: C: Filter paired reads from samtools
7.8 years ago by Kirill Tsyganov ▴ 350
0
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1
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2.5k
views
Comment: Comment: Filter paired reads from samtools
updated 8 weeks ago by 38k • written 7.8 years ago by ▴ 350
0
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0
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4.2k
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Comment: Comment: Python: How to find coordinates of short sequences in a FASTA file?
updated 8 weeks ago by 38k • written 7.8 years ago by ▴ 350
0
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0
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8.2k
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Comment: C: GTF format: isn't the tag "transcript_id" mandatory?
updated 7.9 years ago by 23k • written 7.9 years ago by ▴ 350
4
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1
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8.2k
views
Answer: Answer: Ensembl GTF format: isn't the tag "transcript_id" mandatory?
updated 8 months ago by 38k • written 7.9 years ago by ▴ 350
0
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0
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2.5k
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Comment: C: Pairwise Alignment, Biopython : Bio.pairwise2
7.9 years ago by Kirill Tsyganov ▴ 350
0
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0
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2.5k
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Comment: C: Pairwise Alignment, Biopython : Bio.pairwise2
7.9 years ago by Kirill Tsyganov ▴ 350
5
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0
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4.6k
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Answer: Answer: Gff to fasta: Sort and extract sub-feature sequences from fasta in python
updated 8 months ago by 38k • written 7.9 years ago by ▴ 350
1
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0
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8.2k
views
Comment: Comment: Ensembl GTF format: isn't the tag "transcript_id" mandatory?
updated 8 months ago by 38k • written 7.9 years ago by ▴ 350
0
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1
reply
8.2k
views
Comment: Comment: Ensembl GTF format: isn't the tag "transcript_id" mandatory?
updated 8 months ago by 38k • written 7.9 years ago by ▴ 350
0
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1
reply
6.7k
views
Answer: Answer: RNA-SeQC error no output
updated 8 months ago by 38k • written 7.9 years ago by ▴ 350
4
votes
2
replies
7.9k
views
What is the best practice for BAM sorting?
RNA-Seq samtools STAR
updated 16 hours ago by 38k • written 7.9 years ago by ▴ 350
51 results • Page 1 of 2
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