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Comment: Comment: Reliable method to detect 10x single-cell chemistry?
10 months ago by morovatunc ▴ 560
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1
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1.0k
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Comment: Comment: Reliable method to detect 10x single-cell chemistry?
10 months ago by morovatunc ▴ 560
2
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4
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1.0k
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Reliable method to detect 10x single-cell chemistry?
10x
10 months ago by morovatunc ▴ 560
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0
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1.7k
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Answer: Answer: Need to create a small artificial SRA file for unit testing
12 months ago by morovatunc ▴ 560
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1
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2.1k
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Comment: Comment: Troubles launch IGV on Linux(Debian)
20 months ago by morovatunc ▴ 560
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1
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1.3k
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Comment: Comment: Spaceranger missing spatial coordinates [Discussion]
22 months ago by morovatunc ▴ 560
1
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3
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1.3k
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Forum: Spaceranger missing spatial coordinates [Discussion]
Visium
updated 22 months ago by 151k • written 22 months ago by ▴ 560
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779
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Comment: Comment: Slideseq cell coordinate unit
24 months ago by morovatunc ▴ 560
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0
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779
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Comment: Comment: Slideseq cell coordinate unit
2.0 years ago by morovatunc ▴ 560
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2
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779
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Slideseq cell coordinate unit
Slideseq
24 months ago by morovatunc ▴ 560
1
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2
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4.2k
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Downloading CHIP-seq bed files for ENCODE Histone modification data
ENCODE ChIP-Seq Histone Modifers
updated 2.6 years ago by ▴ 130 • written 9.3 years ago by ▴ 560
4
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1
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4.4k
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Answer: Answer: What does the black lines mean in the IGV track
3.6 years ago by morovatunc ▴ 560
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7.9k
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Comment: Comment: Centrimo error: Template does not contain data section
4.0 years ago by morovatunc ▴ 560
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0
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9.3k
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Comment: C: Extract reads with variant at given position
4.6 years ago by morovatunc ▴ 560
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1
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9.3k
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Comment: C: Extract reads with variant at given position
4.6 years ago by morovatunc ▴ 560
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1.9k
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Comment: C: Transcription Factor Specific Mutation Signature Enrichment
5.1 years ago by morovatunc ▴ 560
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2
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1.9k
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Transcription Factor Specific Mutation Signature Enrichment
mutation signature r
updated 5.1 years ago by • 0 • written 8.2 years ago by ▴ 560
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718
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Answer: C: Getting this information from WGS
5.1 years ago by morovatunc ▴ 560
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0
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2.4k
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Answer: A: Genome Assembly for a Beginner
updated 5.5 years ago by 45k • written 9.4 years ago by ▴ 560
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0
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11k
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Comment: C: HOMER find motifs from BED data
updated 5.5 years ago by 45k • written 9.5 years ago by ▴ 560
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1
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11k
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Comment: C: HOMER find motifs from BED data
updated 5.5 years ago by 45k • written 9.5 years ago by ▴ 560
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9.1k
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Comment: C: Bed file: merging intervals that overlap a certain percentage
updated 5.5 years ago by 45k • written 9.5 years ago by ▴ 560
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1
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4.0k
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Comment: C: Homer mergePeaks : Cannot calculate the mean of overlapped peaks
updated 5.5 years ago by 45k • written 9.5 years ago by ▴ 560
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0
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4.0k
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Comment: C: Homer mergePeaks : Cannot calculate the mean of overlapped peaks
updated 5.5 years ago by 45k • written 9.5 years ago by ▴ 560
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0
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2.3k
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Answer: A: Ovarian cancer & Gene Expression
updated 5.5 years ago by 45k • written 9.5 years ago by ▴ 560
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0
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8.1k
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Comment: C: Finding Chip Seq Overlaps with Bed files
updated 5.5 years ago by 45k • written 9.5 years ago by ▴ 560
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1
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8.1k
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Comment: C: Finding Chip Seq Overlaps with Bed files
updated 5.5 years ago by 45k • written 9.5 years ago by ▴ 560
0
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1
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8.1k
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Comment: C: Finding Chip Seq Overlaps with Bed files
updated 5.5 years ago by 45k • written 9.5 years ago by ▴ 560
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1
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2.8k
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Comment: C: What statistical test should I apply to prove my high confidence values are part
updated 5.5 years ago by 45k • written 9.6 years ago by ▴ 560
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1
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7.1k
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Comment: C: How to find overlapping regions among three bed files [Solved]
updated 5.5 years ago by 45k • written 9.6 years ago by ▴ 560
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0
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14k
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Comment: C: Convert BED(UCSC) to VCF
updated 5.6 years ago by 45k • written 9.6 years ago by ▴ 560
0
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1
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3.2k
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Comment: C: multiIntersectBed How can I implement chip seq peak values with the overlaps?
updated 5.6 years ago by 45k • written 9.6 years ago by ▴ 560
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1
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3.2k
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Comment: Comment: multiIntersectBed How can I implement chip seq peak values with the overlaps?
updated 2.8 years ago by 45k • written 9.6 years ago by ▴ 560
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1
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5.5k
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Comment: C: Finding Overlapping Regions of Chip-Seq peaks, then visualising it.
updated 5.6 years ago by 45k • written 9.6 years ago by ▴ 560
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1
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5.5k
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Comment: C: Finding Overlapping Regions of Chip-Seq peaks, then visualising it.
updated 5.6 years ago by 45k • written 9.6 years ago by ▴ 560
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1
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3.2k
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Comment: C: multiIntersectBed How can I implement chip seq peak values with the overlaps?
updated 5.6 years ago by 45k • written 9.6 years ago by ▴ 560
0
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0
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10.0k
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Comment: A: how to merge overlapping intervals in a bedgraph file
updated 5.6 years ago by 45k • written 9.6 years ago by ▴ 560
0
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1
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5.0k
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Comment: C: IGV peak Visualation Problem
updated 5.6 years ago by 45k • written 9.7 years ago by ▴ 560
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0
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3.2k
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Comment: A: Evaluating Differential Expressed Genes from NimbleGen Pair Data using R oligo p
updated 5.6 years ago by 45k • written 9.9 years ago by ▴ 560
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1
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2.0k
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Comment: C: How to calculate dinucleotide A/T patterns in a given human reference genome reg
6.4 years ago by morovatunc ▴ 560
0
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1
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2.0k
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Comment: C: How to calculate dinucleotide A/T patterns in a given human reference genome reg
6.4 years ago by morovatunc ▴ 560
0
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0
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8.1k
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Comment: C: Finding Chip Seq Overlaps with Bed files
6.4 years ago by morovatunc ▴ 560
9
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15
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8.1k
views
Finding Chip Seq Overlaps with Bed files
bedops ChIP-Seq bedmap bedtools
updated 2.8 years ago by 45k • written 9.6 years ago by ▴ 560
0
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1
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8.1k
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Answer: A: Finding Chip Seq Overlaps with Bed files
6.4 years ago by morovatunc ▴ 560
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0
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2.3k
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Answer: A: IGV/IGB add two lines in a track
6.7 years ago by morovatunc ▴ 560
0
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0
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4.2k
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Comment: C: ICGC Variant Calling Pipelines
updated 6.8 years ago by 45k • written 9.3 years ago by ▴ 560
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1
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2.0k
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Comment: C: FIMO output that preserves padj values
6.8 years ago by morovatunc ▴ 560
0
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0
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2.0k
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Comment: C: FIMO output that preserves padj values
6.8 years ago by morovatunc ▴ 560
2
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0
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1.3k
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Amplicon based sequencing Mutation Calling
mutation calling sequence sequencing
6.8 years ago by morovatunc ▴ 560
1
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7
replies
11k
views
HOMER find motifs from BED data
ChIP-Seq Homer
updated 2.9 years ago by 45k • written 9.5 years ago by ▴ 560
207 results • Page 1 of 5
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