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Downloading CHIP-seq bed files for ENCODE Histone modification data
ENCODE ChIP-Seq Histone Modifers
updated 7 months ago by ▴ 130 • written 7.3 years ago by ▴ 540
4
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1
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1.7k
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Answer: Answer: What does the black lines mean in the IGV track
18 months ago by morovatunc ▴ 540
0
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0
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4.5k
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Comment: Comment: Centrimo error: Template does not contain data section
23 months ago by morovatunc ▴ 540
0
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0
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6.9k
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Comment: C: Extract reads with variant at given position
2.6 years ago by morovatunc ▴ 540
0
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1
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6.9k
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Comment: C: Extract reads with variant at given position
2.6 years ago by morovatunc ▴ 540
0
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0
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1.4k
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Comment: C: Transcription Factor Specific Mutation Signature Enrichment
3.0 years ago by morovatunc ▴ 540
1
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2
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1.4k
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Transcription Factor Specific Mutation Signature Enrichment
mutation signature r
updated 3.0 years ago by • 0 • written 6.1 years ago by ▴ 540
3
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0
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420
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Answer: C: Getting this information from WGS
3.1 years ago by morovatunc ▴ 540
0
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0
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1.9k
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Answer: A: Genome Assembly for a Beginner
updated 3.4 years ago by 39k • written 7.4 years ago by ▴ 540
0
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0
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7.7k
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Comment: C: HOMER find motifs from BED data
updated 3.5 years ago by 39k • written 7.4 years ago by ▴ 540
0
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1
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7.7k
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Comment: C: HOMER find motifs from BED data
updated 3.5 years ago by 39k • written 7.4 years ago by ▴ 540
0
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0
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7.0k
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Comment: C: Bed file: merging intervals that overlap a certain percentage
updated 3.5 years ago by 39k • written 7.4 years ago by ▴ 540
0
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1
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3.0k
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Comment: C: Homer mergePeaks : Cannot calculate the mean of overlapped peaks
updated 3.5 years ago by 39k • written 7.5 years ago by ▴ 540
0
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0
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3.0k
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Comment: C: Homer mergePeaks : Cannot calculate the mean of overlapped peaks
updated 3.5 years ago by 39k • written 7.5 years ago by ▴ 540
0
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0
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1.8k
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Answer: A: Ovarian cancer & Gene Expression
updated 3.5 years ago by 39k • written 7.5 years ago by ▴ 540
0
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0
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5.5k
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Comment: C: Finding Chip Seq Overlaps with Bed files
updated 3.5 years ago by 39k • written 7.5 years ago by ▴ 540
0
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1
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5.5k
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Comment: C: Finding Chip Seq Overlaps with Bed files
updated 3.5 years ago by 39k • written 7.5 years ago by ▴ 540
0
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1
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5.5k
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Comment: C: Finding Chip Seq Overlaps with Bed files
updated 3.5 years ago by 39k • written 7.5 years ago by ▴ 540
0
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1
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2.1k
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Comment: C: What statistical test should I apply to prove my high confidence values are part
updated 3.5 years ago by 39k • written 7.5 years ago by ▴ 540
0
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1
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5.8k
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Comment: C: How to find overlapping regions among three bed files [Solved]
updated 3.5 years ago by 39k • written 7.5 years ago by ▴ 540
0
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0
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11k
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Comment: C: Convert BED(UCSC) to VCF
updated 3.5 years ago by 39k • written 7.6 years ago by ▴ 540
0
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1
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2.3k
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Comment: C: multiIntersectBed How can I implement chip seq peak values with the overlaps?
updated 3.5 years ago by 39k • written 7.6 years ago by ▴ 540
0
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1
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2.3k
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Comment: Comment: multiIntersectBed How can I implement chip seq peak values with the overlaps?
updated 9 months ago by 39k • written 7.6 years ago by ▴ 540
0
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1
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4.0k
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Comment: C: Finding Overlapping Regions of Chip-Seq peaks, then visualising it.
updated 3.5 years ago by 39k • written 7.6 years ago by ▴ 540
0
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1
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4.0k
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Comment: C: Finding Overlapping Regions of Chip-Seq peaks, then visualising it.
updated 3.5 years ago by 39k • written 7.6 years ago by ▴ 540
0
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1
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2.3k
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Comment: C: multiIntersectBed How can I implement chip seq peak values with the overlaps?
updated 3.5 years ago by 39k • written 7.6 years ago by ▴ 540
0
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0
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7.5k
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Comment: A: how to merge overlapping intervals in a bedgraph file
updated 3.5 years ago by 39k • written 7.6 years ago by ▴ 540
0
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1
reply
3.5k
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Comment: C: IGV peak Visualation Problem
updated 3.5 years ago by 39k • written 7.6 years ago by ▴ 540
0
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0
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2.7k
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Comment: A: Evaluating Differential Expressed Genes from NimbleGen Pair Data using R oligo p
updated 3.6 years ago by 39k • written 7.9 years ago by ▴ 540
0
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1
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1.1k
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Comment: C: How to calculate dinucleotide A/T patterns in a given human reference genome reg
4.4 years ago by morovatunc ▴ 540
0
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1
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1.1k
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Comment: C: How to calculate dinucleotide A/T patterns in a given human reference genome reg
4.4 years ago by morovatunc ▴ 540
0
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0
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5.5k
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Comment: C: Finding Chip Seq Overlaps with Bed files
4.4 years ago by morovatunc ▴ 540
9
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15
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5.5k
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Finding Chip Seq Overlaps with Bed files
bedops ChIP-Seq bedmap bedtools
updated 9 months ago by 39k • written 7.5 years ago by ▴ 540
0
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1
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5.5k
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Answer: A: Finding Chip Seq Overlaps with Bed files
4.4 years ago by morovatunc ▴ 540
0
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0
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1.6k
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Answer: A: IGV/IGB add two lines in a track
4.6 years ago by morovatunc ▴ 540
0
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0
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3.3k
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Comment: C: ICGC Variant Calling Pipelines
updated 4.7 years ago by 39k • written 7.3 years ago by ▴ 540
0
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1
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1.3k
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Comment: C: FIMO output that preserves padj values
4.7 years ago by morovatunc ▴ 540
0
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0
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1.3k
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Comment: C: FIMO output that preserves padj values
4.7 years ago by morovatunc ▴ 540
2
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0
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975
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Amplicon based sequencing Mutation Calling
mutation calling sequence sequencing
4.8 years ago by morovatunc ▴ 540
1
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7
replies
7.7k
views
HOMER find motifs from BED data
ChIP-Seq Homer
updated 10 months ago by 39k • written 7.4 years ago by ▴ 540
0
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1
reply
3.2k
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Comment: C: Does anybody success to download data using icgc-storage-client ?
5.1 years ago by morovatunc ▴ 540
0
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1
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918
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Comment: C: Starrseq data how can I characterise reads that maps out of the targeted regions
5.1 years ago by morovatunc ▴ 540
0
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0
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918
views
Comment: C: Starrseq data how can I characterise reads that maps out of the targeted regions
5.1 years ago by morovatunc ▴ 540
2
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5
replies
918
views
Starrseq data how can I characterise reads that maps out of the targeted regions.
alignment sequencing mapping starrseq
5.1 years ago by morovatunc ▴ 540
0
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0
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2.2k
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Comment: C: Simplest output format of blast contamination check
5.3 years ago by morovatunc ▴ 540
0
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0
replies
2.2k
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Comment: C: Simplest output format of blast contamination check
5.3 years ago by morovatunc ▴ 540
0
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2
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2.2k
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Comment: C: Simplest output format of blast contamination check
5.3 years ago by morovatunc ▴ 540
9
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8
replies
2.2k
views
Simplest output format of blast contamination check
blast megablast
updated 5.3 years ago by 34k • written 5.3 years ago by ▴ 540
0
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0
replies
2.1k
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Bedtools -shuffle uniformly distributed bed regions
bedtools
updated 5.3 years ago by 20 • written 7.0 years ago by ▴ 540
0
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0
replies
1.2k
views
Comment: C: Sub-typing patients by a single gene's expression in TCGA dataset.
5.3 years ago by morovatunc ▴ 540
197 results • Page 1 of 4
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