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Comment: Comment: Spaceranger missing spatial coordinates [Discussion]
5 weeks ago by morovatunc ▴ 550
0
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3
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418
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Forum: Spaceranger missing spatial coordinates [Discussion]
Visium
updated 5 weeks ago by 134k • written 5 weeks ago by ▴ 550
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0
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312
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Comment: Comment: Slideseq cell coordinate unit
3 months ago by morovatunc ▴ 550
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0
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312
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Comment: Comment: Slideseq cell coordinate unit
3 months ago by morovatunc ▴ 550
0
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2
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312
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Slideseq cell coordinate unit
Slideseq
3 months ago by morovatunc ▴ 550
1
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2
replies
3.5k
views
Downloading CHIP-seq bed files for ENCODE Histone modification data
ENCODE ChIP-Seq Histone Modifers
updated 10 months ago by ▴ 130 • written 7.6 years ago by ▴ 550
4
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1
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2.0k
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Answer: Answer: What does the black lines mean in the IGV track
22 months ago by morovatunc ▴ 550
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0
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4.9k
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Comment: Comment: Centrimo error: Template does not contain data section
2.3 years ago by morovatunc ▴ 550
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0
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7.3k
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Comment: C: Extract reads with variant at given position
2.9 years ago by morovatunc ▴ 550
0
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1
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7.3k
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Comment: C: Extract reads with variant at given position
2.9 years ago by morovatunc ▴ 550
0
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0
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1.5k
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Comment: C: Transcription Factor Specific Mutation Signature Enrichment
3.4 years ago by morovatunc ▴ 550
1
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2
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1.5k
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Transcription Factor Specific Mutation Signature Enrichment
mutation signature r
updated 3.4 years ago by • 0 • written 6.5 years ago by ▴ 550
3
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0
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454
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Answer: C: Getting this information from WGS
3.4 years ago by morovatunc ▴ 550
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0
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2.0k
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Answer: A: Genome Assembly for a Beginner
updated 3.7 years ago by 40k • written 7.7 years ago by ▴ 550
0
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0
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8.1k
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Comment: C: HOMER find motifs from BED data
updated 3.8 years ago by 40k • written 7.7 years ago by ▴ 550
0
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1
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8.1k
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Comment: C: HOMER find motifs from BED data
updated 3.8 years ago by 40k • written 7.7 years ago by ▴ 550
0
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0
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7.3k
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Comment: C: Bed file: merging intervals that overlap a certain percentage
updated 3.8 years ago by 40k • written 7.8 years ago by ▴ 550
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1
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3.1k
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Comment: C: Homer mergePeaks : Cannot calculate the mean of overlapped peaks
updated 3.8 years ago by 40k • written 7.8 years ago by ▴ 550
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0
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3.1k
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Comment: C: Homer mergePeaks : Cannot calculate the mean of overlapped peaks
updated 3.8 years ago by 40k • written 7.8 years ago by ▴ 550
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0
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1.9k
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Answer: A: Ovarian cancer & Gene Expression
updated 3.8 years ago by 40k • written 7.8 years ago by ▴ 550
0
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0
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6.0k
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Comment: C: Finding Chip Seq Overlaps with Bed files
updated 3.8 years ago by 40k • written 7.8 years ago by ▴ 550
0
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1
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6.0k
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Comment: C: Finding Chip Seq Overlaps with Bed files
updated 3.8 years ago by 40k • written 7.8 years ago by ▴ 550
0
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1
reply
6.0k
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Comment: C: Finding Chip Seq Overlaps with Bed files
updated 3.8 years ago by 40k • written 7.8 years ago by ▴ 550
0
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1
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2.2k
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Comment: C: What statistical test should I apply to prove my high confidence values are part
updated 3.8 years ago by 40k • written 7.8 years ago by ▴ 550
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1
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6.0k
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Comment: C: How to find overlapping regions among three bed files [Solved]
updated 3.8 years ago by 40k • written 7.8 years ago by ▴ 550
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0
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12k
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Comment: C: Convert BED(UCSC) to VCF
updated 3.8 years ago by 40k • written 7.9 years ago by ▴ 550
0
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1
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2.4k
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Comment: C: multiIntersectBed How can I implement chip seq peak values with the overlaps?
updated 3.8 years ago by 40k • written 7.9 years ago by ▴ 550
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1
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2.4k
views
Comment: Comment: multiIntersectBed How can I implement chip seq peak values with the overlaps?
updated 13 months ago by 40k • written 7.9 years ago by ▴ 550
0
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1
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4.2k
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Comment: C: Finding Overlapping Regions of Chip-Seq peaks, then visualising it.
updated 3.8 years ago by 40k • written 7.9 years ago by ▴ 550
0
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1
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4.2k
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Comment: C: Finding Overlapping Regions of Chip-Seq peaks, then visualising it.
updated 3.8 years ago by 40k • written 7.9 years ago by ▴ 550
0
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1
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2.4k
views
Comment: C: multiIntersectBed How can I implement chip seq peak values with the overlaps?
updated 3.8 years ago by 40k • written 7.9 years ago by ▴ 550
0
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0
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7.8k
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Comment: A: how to merge overlapping intervals in a bedgraph file
updated 3.8 years ago by 40k • written 7.9 years ago by ▴ 550
0
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1
reply
3.8k
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Comment: C: IGV peak Visualation Problem
updated 3.9 years ago by 40k • written 7.9 years ago by ▴ 550
0
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0
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2.8k
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Comment: A: Evaluating Differential Expressed Genes from NimbleGen Pair Data using R oligo p
updated 3.9 years ago by 40k • written 8.2 years ago by ▴ 550
0
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1
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1.2k
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Comment: C: How to calculate dinucleotide A/T patterns in a given human reference genome reg
4.7 years ago by morovatunc ▴ 550
0
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1
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1.2k
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Comment: C: How to calculate dinucleotide A/T patterns in a given human reference genome reg
4.7 years ago by morovatunc ▴ 550
0
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0
replies
6.0k
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Comment: C: Finding Chip Seq Overlaps with Bed files
4.7 years ago by morovatunc ▴ 550
0
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1
reply
6.0k
views
Answer: A: Finding Chip Seq Overlaps with Bed files
4.7 years ago by morovatunc ▴ 550
9
votes
15
replies
6.0k
views
Finding Chip Seq Overlaps with Bed files
bedops ChIP-Seq bedmap bedtools
updated 13 months ago by 40k • written 7.8 years ago by ▴ 550
0
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0
replies
1.7k
views
Answer: A: IGV/IGB add two lines in a track
4.9 years ago by morovatunc ▴ 550
0
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0
replies
3.4k
views
Comment: C: ICGC Variant Calling Pipelines
updated 5.0 years ago by 40k • written 7.6 years ago by ▴ 550
0
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1
reply
1.4k
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Comment: C: FIMO output that preserves padj values
5.0 years ago by morovatunc ▴ 550
0
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0
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1.4k
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Comment: C: FIMO output that preserves padj values
5.0 years ago by morovatunc ▴ 550
2
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0
replies
1.0k
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Amplicon based sequencing Mutation Calling
mutation calling sequence sequencing
5.1 years ago by morovatunc ▴ 550
1
vote
7
replies
8.1k
views
HOMER find motifs from BED data
ChIP-Seq Homer
updated 13 months ago by 40k • written 7.7 years ago by ▴ 550
0
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1
reply
3.4k
views
Comment: C: Does anybody success to download data using icgc-storage-client ?
5.4 years ago by morovatunc ▴ 550
0
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1
reply
980
views
Comment: C: Starrseq data how can I characterise reads that maps out of the targeted regions
5.4 years ago by morovatunc ▴ 550
0
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0
replies
980
views
Comment: C: Starrseq data how can I characterise reads that maps out of the targeted regions
5.4 years ago by morovatunc ▴ 550
2
votes
5
replies
980
views
Starrseq data how can I characterise reads that maps out of the targeted regions.
alignment sequencing mapping starrseq
5.4 years ago by morovatunc ▴ 550
0
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0
replies
2.4k
views
Comment: C: Simplest output format of blast contamination check
5.6 years ago by morovatunc ▴ 550
202 results • Page 1 of 5
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