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825
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Comment: Comment: Reliable method to detect 10x single-cell chemistry?
8 months ago by morovatunc ▴ 560
0
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1
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825
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Comment: Comment: Reliable method to detect 10x single-cell chemistry?
8 months ago by morovatunc ▴ 560
2
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4
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825
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Reliable method to detect 10x single-cell chemistry?
10x
8 months ago by morovatunc ▴ 560
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0
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1.6k
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Answer: Answer: Need to create a small artificial SRA file for unit testing
10 months ago by morovatunc ▴ 560
0
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1
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1.9k
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Comment: Comment: Troubles launch IGV on Linux(Debian)
18 months ago by morovatunc ▴ 560
0
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1
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1.1k
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Comment: Comment: Spaceranger missing spatial coordinates [Discussion]
20 months ago by morovatunc ▴ 560
1
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3
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1.1k
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Forum: Spaceranger missing spatial coordinates [Discussion]
Visium
updated 20 months ago by 150k • written 20 months ago by ▴ 560
0
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0
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735
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Comment: Comment: Slideseq cell coordinate unit
22 months ago by morovatunc ▴ 560
0
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0
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735
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Comment: Comment: Slideseq cell coordinate unit
22 months ago by morovatunc ▴ 560
0
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2
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735
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Slideseq cell coordinate unit
Slideseq
22 months ago by morovatunc ▴ 560
1
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2
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4.1k
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Downloading CHIP-seq bed files for ENCODE Histone modification data
ENCODE ChIP-Seq Histone Modifers
updated 2.5 years ago by ▴ 130 • written 9.1 years ago by ▴ 560
4
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1
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4.2k
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Answer: Answer: What does the black lines mean in the IGV track
3.4 years ago by morovatunc ▴ 560
0
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0
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7.5k
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Comment: Comment: Centrimo error: Template does not contain data section
3.8 years ago by morovatunc ▴ 560
0
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0
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9.1k
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Comment: C: Extract reads with variant at given position
4.5 years ago by morovatunc ▴ 560
0
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1
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9.1k
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Comment: C: Extract reads with variant at given position
4.5 years ago by morovatunc ▴ 560
0
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0
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1.9k
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Comment: C: Transcription Factor Specific Mutation Signature Enrichment
4.9 years ago by morovatunc ▴ 560
1
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2
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1.9k
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Transcription Factor Specific Mutation Signature Enrichment
mutation signature r
updated 4.9 years ago by • 0 • written 8.0 years ago by ▴ 560
3
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0
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683
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Answer: C: Getting this information from WGS
5.0 years ago by morovatunc ▴ 560
0
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0
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2.4k
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Answer: A: Genome Assembly for a Beginner
updated 5.3 years ago by 45k • written 9.2 years ago by ▴ 560
0
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0
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10k
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Comment: C: HOMER find motifs from BED data
updated 5.3 years ago by 45k • written 9.3 years ago by ▴ 560
0
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1
reply
10k
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Comment: C: HOMER find motifs from BED data
updated 5.3 years ago by 45k • written 9.3 years ago by ▴ 560
0
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0
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8.8k
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Comment: C: Bed file: merging intervals that overlap a certain percentage
updated 5.3 years ago by 45k • written 9.3 years ago by ▴ 560
0
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1
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3.8k
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Comment: C: Homer mergePeaks : Cannot calculate the mean of overlapped peaks
updated 5.4 years ago by 45k • written 9.4 years ago by ▴ 560
0
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0
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3.8k
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Comment: C: Homer mergePeaks : Cannot calculate the mean of overlapped peaks
updated 5.4 years ago by 45k • written 9.4 years ago by ▴ 560
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0
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2.2k
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Answer: A: Ovarian cancer & Gene Expression
updated 5.4 years ago by 45k • written 9.4 years ago by ▴ 560
0
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0
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7.9k
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Comment: C: Finding Chip Seq Overlaps with Bed files
updated 5.4 years ago by 45k • written 9.4 years ago by ▴ 560
0
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1
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7.9k
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Comment: C: Finding Chip Seq Overlaps with Bed files
updated 5.4 years ago by 45k • written 9.4 years ago by ▴ 560
0
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1
reply
7.9k
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Comment: C: Finding Chip Seq Overlaps with Bed files
updated 5.4 years ago by 45k • written 9.4 years ago by ▴ 560
0
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1
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2.7k
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Comment: C: What statistical test should I apply to prove my high confidence values are part
updated 5.4 years ago by 45k • written 9.4 years ago by ▴ 560
0
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1
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7.0k
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Comment: C: How to find overlapping regions among three bed files [Solved]
updated 5.4 years ago by 45k • written 9.4 years ago by ▴ 560
0
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0
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14k
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Comment: C: Convert BED(UCSC) to VCF
updated 5.4 years ago by 45k • written 9.5 years ago by ▴ 560
0
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1
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3.1k
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Comment: C: multiIntersectBed How can I implement chip seq peak values with the overlaps?
updated 5.4 years ago by 45k • written 9.5 years ago by ▴ 560
0
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1
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3.1k
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Comment: Comment: multiIntersectBed How can I implement chip seq peak values with the overlaps?
updated 2.7 years ago by 45k • written 9.5 years ago by ▴ 560
0
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1
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5.4k
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Comment: C: Finding Overlapping Regions of Chip-Seq peaks, then visualising it.
updated 5.4 years ago by 45k • written 9.5 years ago by ▴ 560
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1
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5.4k
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Comment: C: Finding Overlapping Regions of Chip-Seq peaks, then visualising it.
updated 5.4 years ago by 45k • written 9.5 years ago by ▴ 560
0
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1
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3.1k
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Comment: C: multiIntersectBed How can I implement chip seq peak values with the overlaps?
updated 5.4 years ago by 45k • written 9.5 years ago by ▴ 560
0
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0
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9.7k
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Comment: A: how to merge overlapping intervals in a bedgraph file
updated 5.4 years ago by 45k • written 9.5 years ago by ▴ 560
0
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1
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4.9k
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Comment: C: IGV peak Visualation Problem
updated 5.4 years ago by 45k • written 9.5 years ago by ▴ 560
0
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0
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3.2k
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Comment: A: Evaluating Differential Expressed Genes from NimbleGen Pair Data using R oligo p
updated 5.4 years ago by 45k • written 9.8 years ago by ▴ 560
0
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1
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1.8k
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Comment: C: How to calculate dinucleotide A/T patterns in a given human reference genome reg
6.3 years ago by morovatunc ▴ 560
0
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1
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1.8k
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Comment: C: How to calculate dinucleotide A/T patterns in a given human reference genome reg
6.3 years ago by morovatunc ▴ 560
0
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0
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7.9k
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Comment: C: Finding Chip Seq Overlaps with Bed files
6.3 years ago by morovatunc ▴ 560
9
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15
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7.9k
views
Finding Chip Seq Overlaps with Bed files
bedops ChIP-Seq bedmap bedtools
updated 2.7 years ago by 45k • written 9.4 years ago by ▴ 560
0
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1
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7.9k
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Answer: A: Finding Chip Seq Overlaps with Bed files
6.3 years ago by morovatunc ▴ 560
0
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0
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2.2k
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Answer: A: IGV/IGB add two lines in a track
6.5 years ago by morovatunc ▴ 560
0
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0
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4.1k
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Comment: C: ICGC Variant Calling Pipelines
updated 6.6 years ago by 45k • written 9.1 years ago by ▴ 560
0
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1
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1.9k
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Comment: C: FIMO output that preserves padj values
6.6 years ago by morovatunc ▴ 560
0
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0
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1.9k
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Comment: C: FIMO output that preserves padj values
6.6 years ago by morovatunc ▴ 560
2
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0
replies
1.2k
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Amplicon based sequencing Mutation Calling
mutation calling sequence sequencing
6.6 years ago by morovatunc ▴ 560
1
vote
7
replies
10k
views
HOMER find motifs from BED data
ChIP-Seq Homer
updated 2.7 years ago by 45k • written 9.3 years ago by ▴ 560
207 results • Page 1 of 5
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