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News: The Biostar Handbook. A bioinformatics e-book for beginners.
training tutorial News handbook
updated 5 weeks ago by 730 • written 5.5 years ago by 93k
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Comment: Comment: How to extract reads that map exclusively to a single site with 1 or zero mismat
1 day ago by Istvan Albert 93k
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Comment: Comment: Do you need to define adapter sequences for trimming and QC tools?
2 days ago by Istvan Albert 93k
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Comment: Comment: Do you need to define adapter sequences for trimming and QC tools?
2 days ago by Istvan Albert 93k
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212
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Answer: Answer: Do you need to define adapter sequences for trimming and QC tools?
2 days ago by Istvan Albert 93k
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Comment: Comment: How to interpret flagstat output
2 days ago by Istvan Albert 93k
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Answer: Answer: Help me with bacteria classification
2 days ago by Istvan Albert 93k
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Answer: Answer: What is difference between Bioinformatics and Data Science?
2 days ago by Istvan Albert 93k
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209
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Comment: Comment: How to extract reads that map exclusively to a single site with 1 or zero mismat
2 days ago by Istvan Albert 93k
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Answer: Answer: RPKM, how to normalize for library size
2 days ago by Istvan Albert 93k
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Answer: Answer: Getting fastq files as the output of bowtie2
2 days ago by Istvan Albert 93k
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209
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Answer: Answer: How to extract reads that map exclusively to a single site with 1 or zero mismat
2 days ago by Istvan Albert 93k
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150
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Answer: Answer: Flagstat
2 days ago by Istvan Albert 93k
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275
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Comment: Comment: How to count mapping rates for ChIP-seq?
3 days ago by Istvan Albert 93k
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275
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Comment: Comment: How to count mapping rates for ChIP-seq?
4 days ago by Istvan Albert 93k
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275
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Answer: Answer: How to count mapping rates for ChIP-seq?
4 days ago by Istvan Albert 93k
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Comment: Comment: Trimming RNAseq data for transcriptome assembly
8 days ago by Istvan Albert 93k
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Comment: Comment: What is cut-off for significance in DE analysis in sc-RNA seq data
8 days ago by Istvan Albert 93k
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303
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Answer: Answer: What does the sixth column of the unstranded bed file show +-?
8 days ago by Istvan Albert 93k
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Answer: Answer: Single-read mapped reads? Fastp paper unclear
11 days ago by Istvan Albert 93k
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Answer: Answer: bowtie2-build problem to index the human genome
12 days ago by Istvan Albert 93k
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Comment: Comment: TMM or TPM for RNA sequence differential gene expression analysis
15 days ago by Istvan Albert 93k
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Comment: Comment: Help me understand the Nanopore fastqc results
15 days ago by Istvan Albert 93k
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591
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Answer: Answer: TMM or TPM for RNA sequence differential gene expression analysis
16 days ago by Istvan Albert 93k
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Comment: Comment: building snpEff database
16 days ago by Istvan Albert 93k
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Answer: Answer: trimming adapter sequences
16 days ago by Istvan Albert 93k
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Comment: Comment: Doubts with mash output
16 days ago by Istvan Albert 93k
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Comment: Comment: How to run BLAST locally for multiple fasta files
16 days ago by Istvan Albert 93k
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375
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Answer: Answer: Help me understand the Nanopore fastqc results
16 days ago by Istvan Albert 93k
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302
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Comment: Comment: Metagenomic quantification (abundance of reads on assembled reference)
17 days ago by Istvan Albert 93k
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Comment: Comment: How to simulate reads for a number of individuals from one population?
17 days ago by Istvan Albert 93k
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273
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Comment: Comment: How to deal with asterisk in bam file after alignment with STAR
17 days ago by Istvan Albert 93k
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Answer: Answer: Metagenomic quantification (abundance of reads on assembled reference)
17 days ago by Istvan Albert 93k
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Answer: Answer: From .txt to .vcf
17 days ago by Istvan Albert 93k
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Comment: Comment: The Biostar Herald for Monday, May 02, 2022
17 days ago by Istvan Albert 93k
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Comment: Comment: Genes looking differential abundant are not accoring to DESeq2
18 days ago by Istvan Albert 93k
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335
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Comment: Comment: retrieving paired end sequencing data with fasts-dump
19 days ago by Istvan Albert 93k
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335
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Answer: Answer: retrieving paired end sequencing data with fasts-dump
20 days ago by Istvan Albert 93k
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Comment: Comment: snakemake
20 days ago by Istvan Albert 93k
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Answer: Answer: paired end mapping with one end being unique and the other end multiple
20 days ago by Istvan Albert 93k
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246
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Answer: Answer: Running fastqc
20 days ago by Istvan Albert 93k
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335
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Answer: Answer: Proper parameters for samtools view?
21 days ago by Istvan Albert 93k
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255
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Answer: Answer: How to simulate reads for a number of individuals from one population?
21 days ago by Istvan Albert 93k
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Answer: Answer: Enrichment Analysis
21 days ago by Istvan Albert 93k
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Answer: Answer: statistic test
21 days ago by Istvan Albert 93k
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181
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Answer: Answer: Samtools coverage vs samtools depth for % coverage
21 days ago by Istvan Albert 93k
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380
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Answer: Answer: Genes looking differential abundant are not accoring to DESeq2
22 days ago by Istvan Albert 93k
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Answer: Answer: snpEff predicts stop_gained, but SNP wouldn't produce a stop codon
22 days ago by Istvan Albert 93k
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Answer: Answer: Biostars Handbook missing line of code
22 days ago by Istvan Albert 93k
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286
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Comment: Comment: Problem with adapters and taxonomy
23 days ago by Istvan Albert 93k
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