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News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 8 days ago by 3.5k • written 8.4 years ago by 102k
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321
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Answer: Answer: Detection SNPs and Indels Bacteria
5 days ago by Istvan Albert 102k
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569
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Comment: Comment: Why don't I see people calculating FPKM from normalized read counts?
6 days ago by Istvan Albert 102k
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764
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Answer: Answer: TPM vs FPKM divergence at high values
6 days ago by Istvan Albert 102k
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764
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Comment: Comment: TPM vs FPKM divergence at high values
6 days ago by Istvan Albert 102k
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1.0k
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Comment: Comment: Extract length of sample sequence from vcf
7 days ago by Istvan Albert 102k
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849
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Comment: Comment: Which tools use or rely on the XA tag in SAM/BAM/CRAM files?
11 days ago by Istvan Albert 102k
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849
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Comment: Comment: Which tools use or rely on the XA tag in SAM/BAM/CRAM files?
11 days ago by Istvan Albert 102k
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3
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849
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Answer: Answer: Which tools use or rely on the XA tag in SAM/BAM/CRAM files?
11 days ago by Istvan Albert 102k
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2
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355
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Comment: Comment: Is Centering and Scaling Essential for Expression Data as Input for Machine Lear
11 days ago by Istvan Albert 102k
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605
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Answer: Answer: Discrepancy between positions on IGV and NCBI's PrimerBLAST
12 days ago by Istvan Albert 102k
3
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384
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Answer: Answer: SRA Toolkit - three fastq files - which is which?
12 days ago by Istvan Albert 102k
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398
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Comment: Comment: Short reads to identify stuctural variants
12 days ago by Istvan Albert 102k
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475
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Comment: Comment: Poor alignment rates using Bowtie
12 days ago by Istvan Albert 102k
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272
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Comment: Comment: Why does Radian run so much slower than vanilla R?
13 days ago by Istvan Albert 102k
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1
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475
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Comment: Comment: Poor alignment rates using Bowtie
13 days ago by Istvan Albert 102k
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475
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Comment: Comment: Poor alignment rates using Bowtie
13 days ago by Istvan Albert 102k
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1.0k
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Comment: Comment: Extract length of sample sequence from vcf
13 days ago by Istvan Albert 102k
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0
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1.0k
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Comment: Comment: Extract length of sample sequence from vcf
17 days ago by Istvan Albert 102k
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514
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Comment: Comment: Is there a tool to obtain GO terms for thousands of genes at once?
17 days ago by Istvan Albert 102k
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429
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Answer: Answer: Modify read groups in BAM file
18 days ago by Istvan Albert 102k
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902
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Comment: Comment: Larger genome size than expected-please help
18 days ago by Istvan Albert 102k
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1
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31k
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Comment: Comment: How To Separate Illumina Based Strand Specific Rna-Seq Alignments By Strand
18 days ago by Istvan Albert 102k
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423
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Comment: Comment: PCA plots in ATAC-seq replicates: Is it okay to use vst transformed data for vis
18 days ago by Istvan Albert 102k
80
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32
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18 follow
Tutorial: How To Separate Illumina Based Strand Specific Rna-Seq Alignments By Strand
RNA-seq
updated 17 days ago by ▴ 10 • written 11.2 years ago by 102k
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902
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Answer: Answer: Larger genome size than expected-please help
19 days ago by Istvan Albert 102k
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0
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287
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Comment: Comment: VCFtools + easySFS snp # discordance
20 days ago by Istvan Albert 102k
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595
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Answer: Answer: Depth in Cram file does not match depth in VCF file
20 days ago by Istvan Albert 102k
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514
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Comment: Comment: Is there a tool to obtain GO terms for thousands of genes at once?
20 days ago by Istvan Albert 102k
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1
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490
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Answer: Answer: Wolfram tech for bio data analysis
20 days ago by Istvan Albert 102k
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415
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Comment: Comment: Discrepancy between BAM and vcf
24 days ago by Istvan Albert 102k
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0
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489
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Comment: Comment: nanopore SNV callers returns empty VCF
27 days ago by Istvan Albert 102k
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1
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391
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Answer: Answer: bwa-mem keeps failing to locate the index files
4 weeks ago by Istvan Albert 102k
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1
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489
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Comment: Comment: nanopore SNV callers returns empty VCF
27 days ago by Istvan Albert 102k
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0
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495
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Answer: Answer: Is there too little variation to detect meaningful gene changes?
4 weeks ago by Istvan Albert 102k
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1
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489
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Answer: Answer: nanopore SNV callers returns empty VCF
4 weeks ago by Istvan Albert 102k
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1
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284
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Comment: Comment: Question about assigning gene names, tximport and DESeq2
4 weeks ago by Istvan Albert 102k
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0
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31k
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Comment: Comment: How To Separate Illumina Based Strand Specific Rna-Seq Alignments By Strand
5 weeks ago by Istvan Albert 102k
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0
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3.3k
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Comment: Comment: Understanding bowtie2 for short reference sequences
10 weeks ago by Istvan Albert 102k
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0
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376
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Answer: Answer: Gene ontology and NCBI blast analysis
11 weeks ago by Istvan Albert 102k
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0
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767
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Comment: Comment: Drosophila melanogaster dm3 intron percentage too high
11 weeks ago by Istvan Albert 102k
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1
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767
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Comment: Comment: Drosophila melanogaster dm3 intron percentage too high
11 weeks ago by Istvan Albert 102k
2
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0
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1.6k
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Comment: Comment: How do you estimate time to complete a project or task?
11 weeks ago by Istvan Albert 102k
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1
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394
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Comment: Comment: What is the next step after getting the raw counts matrix for RNA-seq data?
11 weeks ago by Istvan Albert 102k
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1
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659
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Comment: Comment: Why don't mRNA levels measure protein synthesis rates?
11 weeks ago by Istvan Albert 102k
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1
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767
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Answer: Answer: Drosophila melanogaster dm3 intron percentage too high
11 weeks ago by Istvan Albert 102k
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0
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247
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Comment: Comment: Why Is My Uniquely Mapped Read Count Higher in Samtools Compared to Bowtie2?
11 weeks ago by Istvan Albert 102k
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0
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659
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Comment: Comment: Why don't mRNA levels measure protein synthesis rates?
11 weeks ago by Istvan Albert 102k
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2
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659
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Answer: Answer: Why don't mRNA levels measure protein synthesis rates?
11 weeks ago by Istvan Albert 102k
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0
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503
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Comment: Comment: bcftools mpileup returns vcf files with only headers
12 weeks ago by Istvan Albert 102k
6,052 results • Page 1 of 122
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