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2
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8
replies
1.8k
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Read block operation failed with BAM file
bgzip samtools bam pysam htslib
updated 8 months ago by 3.1k • written 9 months ago by 35k
2
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0
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792
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Answer: Answer: Create 10,000bp windows for a SNP file and assign each SNP to its respective win
9 months ago by Alex Reynolds 35k
0
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0
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1.8k
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Comment: Comment: Read block operation failed with BAM file
9 months ago by Alex Reynolds 35k
0
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0
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1.8k
views
Comment: Comment: bedops alternative for bedtools -unionbedg ?
9 months ago by Alex Reynolds 35k
0
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0
replies
1.8k
views
Comment: Comment: bedops alternative for bedtools -unionbedg ?
9 months ago by Alex Reynolds 35k
0
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2
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1.8k
views
Comment: Comment: bedops alternative for bedtools -unionbedg ?
9 months ago by Alex Reynolds 35k
0
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1
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1.1k
views
Comment: Comment: Neither pysam nor samtools reading HTTPS-sourced BAM file correctly
9 months ago by Alex Reynolds 35k
3
votes
5
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1.1k
views
Neither pysam nor samtools reading HTTPS-sourced BAM file correctly
bam pysam samtools
updated 9 months ago by 101k • written 9 months ago by 35k
0
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0
replies
3.9k
views
Comment: Comment: Reproduce the article "The complete sequence of a human genome."
9 months ago by Alex Reynolds 35k
5
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2
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3.9k
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Answer: Answer: Reproduce the article "The complete sequence of a human genome."
9 months ago by Alex Reynolds 35k
0
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0
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1.8k
views
Comment: Comment: bedops alternative for bedtools -unionbedg ?
9 months ago by Alex Reynolds 35k
3
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2
replies
1.8k
views
Answer: Answer: bedops alternative for bedtools -unionbedg ?
9 months ago by Alex Reynolds 35k
0
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1
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1.6k
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Answer: Answer: Is Bioinformatics a Professional Degree?
9 months ago by Alex Reynolds 35k
0
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0
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976
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Answer: Answer: Scanning a genomic region for TFBS
10 months ago by Alex Reynolds 35k
0
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0
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681
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Answer: Answer: Identify binding motifs within large super enhancer region
11 months ago by Alex Reynolds 35k
1
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0
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1.7k
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Comment: Comment: What happens when a bioinformatician has his own genome sequenced for $300?
12 months ago by Alex Reynolds 35k
5
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0
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1.7k
views
Comment: Comment: What happens when a bioinformatician has his own genome sequenced for $300?
12 months ago by Alex Reynolds 35k
0
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0
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994
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Answer: Answer: BED files
12 months ago by Alex Reynolds 35k
0
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0
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3.9k
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Comment: Comment: Decoding MM and ML tags in .SAM file
12 months ago by Alex Reynolds 35k
1
vote
1
reply
723
views
Answer: Answer: how to intersect multiple bed files and get results in uncollapsed genomic inter
12 months ago by Alex Reynolds 35k
0
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0
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378
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LAD/TAD and recombination hotspot data
hotspot recombination lad tad
13 months ago by Alex Reynolds 35k
2
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2
replies
3.9k
views
Answer: Answer: Decoding MM and ML tags in .SAM file
11 months ago by Alex Reynolds 35k
3
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4
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935
views
Fast BAM header editing
bam
updated 13 months ago by ★ 3.8k • written 13 months ago by 35k
0
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0
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935
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Comment: Comment: Fast BAM header editing
13 months ago by Alex Reynolds 35k
0
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1
reply
1.8k
views
Comment: Comment: Finding TF motifs enriched in series of ATAC-seq peaks (using fimo?)
13 months ago by Alex Reynolds 35k
1
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1
reply
1.8k
views
Comment: Comment: Finding TF motifs enriched in series of ATAC-seq peaks (using fimo?)
13 months ago by Alex Reynolds 35k
1
vote
1
reply
1.8k
views
Answer: Answer: Finding TF motifs enriched in series of ATAC-seq peaks (using fimo?)
13 months ago by Alex Reynolds 35k
0
votes
1
reply
690
views
Answer: Answer: Does it possible to know what are the adjacent genes up to 1000bp upstream and
15 months ago by Alex Reynolds 35k
0
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1
reply
2.3k
views
Comment: Comment: gtf2bed not converting to bed
15 months ago by Alex Reynolds 35k
1
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1
reply
2.3k
views
Comment: Comment: gtf2bed not converting to bed
15 months ago by Alex Reynolds 35k
0
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2
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2.3k
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Comment: Comment: gtf2bed not converting to bed
15 months ago by Alex Reynolds 35k
2
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0
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2.3k
views
Answer: Answer: gtf2bed not converting to bed
15 months ago by Alex Reynolds 35k
1
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0
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629
views
Answer: Answer: How do you get functional/biological role of motifs?
16 months ago by Alex Reynolds 35k
0
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0
replies
1.0k
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Comment: Comment: Merging and intersecting genomic ranges for an indefinite number of files
18 months ago by Alex Reynolds 35k
0
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0
replies
1.0k
views
Answer: Answer: Merging and intersecting genomic ranges for an indefinite number of files
18 months ago by Alex Reynolds 35k
0
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1
reply
1.0k
views
Answer: Answer: Merging and intersecting genomic ranges for an indefinite number of files
18 months ago by Alex Reynolds 35k
2
votes
1
reply
980
views
Answer: Answer: How can I use nohup command when filtering SNPs?
18 months ago by Alex Reynolds 35k
1
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0
replies
1.4k
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Answer: Answer: Bedtools merge but only if intersection exists
18 months ago by Alex Reynolds 35k
0
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0
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553
views
Comment: Comment: trackBrowser: Visualization of sequencing data within a given genome region
19 months ago by Alex Reynolds 35k
0
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0
replies
10k
views
Comment: Comment: Laptops for bioinformatics
19 months ago by Alex Reynolds 35k
1
vote
1
reply
1.8k
views
Comment: Comment: How to find overlapping regions in a single bed file
21 months ago by Alex Reynolds 35k
1
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1
reply
1.8k
views
Answer: Answer: How to find overlapping regions in a single bed file
21 months ago by Alex Reynolds 35k
0
votes
0
replies
970
views
Comment: Comment: Unable to install bedops and bedtools on windows 11
22 months ago by Alex Reynolds 35k
0
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0
replies
1.8k
views
Comment: Comment: Count regions that overlap with python
23 months ago by Alex Reynolds 35k
0
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0
replies
1.8k
views
Comment: Comment: Count regions that overlap with python
23 months ago by Alex Reynolds 35k
0
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1
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1.8k
views
Answer: Answer: Count regions that overlap with python
23 months ago by Alex Reynolds 35k
2
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0
replies
2.4k
views
Answer: Answer: Best formats for storing large amounts of data for random access
23 months ago by Alex Reynolds 35k
0
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0
replies
495
views
Answer: Answer: Visualization of trascription factor family grouped by biological function
23 months ago by Alex Reynolds 35k
1
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0
replies
58k
views
Comment: Comment: How Can I Know The Length Of Mapped Reads From Bam File?
23 months ago by Alex Reynolds 35k
1
vote
0
replies
2.9k
views
Answer: Answer: GFF to BED conversion
23 months ago by Alex Reynolds 35k
2,879 results • Page 2 of 58
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