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Comment: Comment: Some lines are not well organized in BED file, how to correct them ? Thanks a lo
22 months ago by Alex Reynolds 36k
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4.1k
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Answer: Answer: Some lines are not well organized in BED file, how to correct them ? Thanks a lo
22 months ago by Alex Reynolds 36k
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995
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Answer: Answer: identify genes
23 months ago by Alex Reynolds 36k
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2
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4.2k
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Comment: Comment: PanDepth, an ultra-fast and efficient genomic tool for coverage calculation
23 months ago by Alex Reynolds 36k
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1.6k
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Comment: Comment: Where can I get a list of SNPs mapping overlapping genes in humans?
23 months ago by Alex Reynolds 36k
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1.6k
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Comment: Comment: Where can I get a list of SNPs mapping overlapping genes in humans?
23 months ago by Alex Reynolds 36k
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2
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1.6k
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Answer: Answer: Where can I get a list of SNPs mapping overlapping genes in humans?
23 months ago by Alex Reynolds 36k
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1
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11k
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Comment: Comment: Decoding MM and ML tags in .SAM file
2.0 years ago by Alex Reynolds 36k
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2.0k
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Answer: Answer: Filter a BED file based on genome coordinates for gene names
2.0 years ago by Alex Reynolds 36k
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1.2k
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Answer: Answer: distance between chip peaks and individual TSS
2.0 years ago by Alex Reynolds 36k
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0
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2.0k
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Answer: Answer: Simple tools for creation of figures of gene and protein structure
2.1 years ago by Alex Reynolds 36k
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0
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1.4k
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Answer: Answer: Visualize raw rna fastq file and aligned bam file
2.1 years ago by Alex Reynolds 36k
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1
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17k
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Comment: Comment: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
2.1 years ago by Alex Reynolds 36k
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1
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3.2k
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Comment: Comment: Getting the overlap between two GTF files
2.1 years ago by Alex Reynolds 36k
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1
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3.2k
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Comment: Comment: Getting the overlap between two GTF files
2.1 years ago by Alex Reynolds 36k
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3.2k
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Answer: Answer: Getting the overlap between two GTF files
2.1 years ago by Alex Reynolds 36k
1
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1
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1.8k
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Comment: Comment: Mapping SNP rsIds/ positions to genes coding for proteins
2.2 years ago by Alex Reynolds 36k
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1
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1.8k
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Answer: Answer: Mapping SNP rsIds/ positions to genes coding for proteins
2.2 years ago by Alex Reynolds 36k
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1.8k
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Answer: Answer: BED files
2.2 years ago by Alex Reynolds 36k
1
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1
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2.3k
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Comment: Comment: Filter human transcription factors
2.2 years ago by Alex Reynolds 36k
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1
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4.7k
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Comment: Comment: Read block operation failed with BAM file
2.2 years ago by Alex Reynolds 36k
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0
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1.0k
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Answer: Answer: Visualize where kmers are on a reference genome
2.2 years ago by Alex Reynolds 36k
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0
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4.7k
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Comment: Comment: Read block operation failed with BAM file
2.2 years ago by Alex Reynolds 36k
2
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8
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4.7k
views
Read block operation failed with BAM file
bgzip samtools bam pysam htslib
updated 2.2 years ago by 3.1k • written 2.2 years ago by 36k
2
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0
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1.5k
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Answer: Answer: Create 10,000bp windows for a SNP file and assign each SNP to its respective win
2.2 years ago by Alex Reynolds 36k
0
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0
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4.7k
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Comment: Comment: Read block operation failed with BAM file
2.2 years ago by Alex Reynolds 36k
0
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0
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4.3k
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Comment: Comment: bedops alternative for bedtools -unionbedg ?
2.2 years ago by Alex Reynolds 36k
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0
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4.3k
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Comment: Comment: bedops alternative for bedtools -unionbedg ?
2.2 years ago by Alex Reynolds 36k
0
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2
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4.3k
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Comment: Comment: bedops alternative for bedtools -unionbedg ?
2.2 years ago by Alex Reynolds 36k
0
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1
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2.1k
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Comment: Comment: Neither pysam nor samtools reading HTTPS-sourced BAM file correctly
2.2 years ago by Alex Reynolds 36k
3
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5
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2.1k
views
Neither pysam nor samtools reading HTTPS-sourced BAM file correctly
bam pysam samtools
updated 2.2 years ago by 103k • written 2.2 years ago by 36k
0
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0
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5.8k
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Comment: Comment: Reproduce the article "The complete sequence of a human genome."
2.2 years ago by Alex Reynolds 36k
5
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2
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5.8k
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Answer: Answer: Reproduce the article "The complete sequence of a human genome."
2.2 years ago by Alex Reynolds 36k
0
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0
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4.3k
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Comment: Comment: bedops alternative for bedtools -unionbedg ?
2.2 years ago by Alex Reynolds 36k
3
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2
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4.3k
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Answer: Answer: bedops alternative for bedtools -unionbedg ?
2.2 years ago by Alex Reynolds 36k
0
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1
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3.2k
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Answer: Answer: Is Bioinformatics a Professional Degree?
2.2 years ago by Alex Reynolds 36k
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0
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3.2k
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Answer: Answer: Scanning a genomic region for TFBS
2.3 years ago by Alex Reynolds 36k
0
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0
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1.5k
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Answer: Answer: Identify binding motifs within large super enhancer region
2.4 years ago by Alex Reynolds 36k
1
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0
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3.1k
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Comment: Comment: What happens when a bioinformatician has his own genome sequenced for $300?
2.4 years ago by Alex Reynolds 36k
5
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0
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3.1k
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Comment: Comment: What happens when a bioinformatician has his own genome sequenced for $300?
2.4 years ago by Alex Reynolds 36k
0
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0
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1.8k
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Answer: Answer: BED files
2.5 years ago by Alex Reynolds 36k
0
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0
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11k
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Comment: Comment: Decoding MM and ML tags in .SAM file
2.5 years ago by Alex Reynolds 36k
1
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1
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1.4k
views
Answer: Answer: how to intersect multiple bed files and get results in uncollapsed genomic inter
2.4 years ago by Alex Reynolds 36k
0
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0
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706
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LAD/TAD and recombination hotspot data
hotspot recombination lad tad
2.5 years ago by Alex Reynolds 36k
6
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2
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11k
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Answer: Answer: Decoding MM and ML tags in .SAM file
2.4 years ago by Alex Reynolds 36k
3
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4
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1.8k
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Fast BAM header editing
bam
updated 2.5 years ago by ★ 4.4k • written 2.5 years ago by 36k
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0
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1.8k
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Comment: Comment: Fast BAM header editing
2.5 years ago by Alex Reynolds 36k
0
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1
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4.2k
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Comment: Comment: Finding TF motifs enriched in series of ATAC-seq peaks (using fimo?)
2.5 years ago by Alex Reynolds 36k
1
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1
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4.2k
views
Comment: Comment: Finding TF motifs enriched in series of ATAC-seq peaks (using fimo?)
2.5 years ago by Alex Reynolds 36k
1
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1
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4.2k
views
Answer: Answer: Finding TF motifs enriched in series of ATAC-seq peaks (using fimo?)
2.5 years ago by Alex Reynolds 36k
2,902 results • Page 2 of 59
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