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1
vote
0
replies
48k
views
Comment:
C: Converting a VCF with SNPs and indels to BED format
8.2 years ago by
Alex Reynolds
36k
1
vote
1
reply
48k
views
Comment:
C: Converting a VCF with SNPs and indels to BED format
8.2 years ago by
Alex Reynolds
36k
0
votes
1
reply
48k
views
Comment:
C: Converting a VCF with SNPs and indels to BED format
8.2 years ago by
Alex Reynolds
36k
1
vote
0
replies
4.3k
views
Answer:
A: gc content file for human genome large and difficult to parse into separate chro
8.2 years ago by
Alex Reynolds
36k
5
votes
0
replies
2.8k
views
Tutorial:
Installing multiprocessor-capable MEME to work with a Slurm job scheduler environment
slurm
meme
parallel
updated 2.5 years ago by
Ram
45k • written 8.2 years ago by
Alex Reynolds
36k
4
votes
0
replies
5.5k
views
Answer:
A: How to obtain rs ID having genomic position
8.2 years ago by
Alex Reynolds
36k
1
vote
0
replies
2.0k
views
Answer:
A: Gene annotation from genomic features
8.2 years ago by
Alex Reynolds
36k
0
votes
0
replies
2.4k
views
Answer:
A: Finding Transcriptional Factor Binding Motifs by Table Browser in UCSC
8.2 years ago by
Alex Reynolds
36k
0
votes
1
reply
2.4k
views
Comment:
C: Genes around open regions
8.2 years ago by
Alex Reynolds
36k
0
votes
0
replies
5.3k
views
Comment:
C: bedtools merge - removing features completly overlapped by other features
8.2 years ago by
Alex Reynolds
36k
1
vote
2
replies
5.3k
views
Answer:
A: bedtools merge - removing features completly overlapped by other features
8.2 years ago by
Alex Reynolds
36k
0
votes
0
replies
1.9k
views
Comment:
C: Eliminating repetetive motifs found by MEME
8.2 years ago by
Alex Reynolds
36k
0
votes
1
reply
5.3k
views
Comment:
C: bedtools merge - removing features completly overlapped by other features
8.2 years ago by
Alex Reynolds
36k
0
votes
1
reply
5.3k
views
Comment:
C: bedtools merge - removing features completly overlapped by other features
8.2 years ago by
Alex Reynolds
36k
3
votes
0
replies
3.4k
views
Answer:
A: fixedStep or variableStep Smoothening wig file
8.2 years ago by
Alex Reynolds
36k
2
votes
1
reply
1.9k
views
Answer:
A: Eliminating repetetive motifs found by MEME
8.2 years ago by
Alex Reynolds
36k
3
votes
1
reply
2.4k
views
Answer:
A: Genes around open regions
8.2 years ago by
Alex Reynolds
36k
2
votes
0
replies
9.0k
views
Answer:
A: Pulling out gene names from a FASTA file with a list of IDs
8.2 years ago by
Alex Reynolds
36k
1
vote
1
reply
4.1k
views
Answer:
A: How to split columns into rows based on gene ids in R?
8.2 years ago by
Alex Reynolds
36k
1
vote
0
replies
19k
views
Comment:
C: Convert sequence file to fasta format using python
8.2 years ago by
Alex Reynolds
36k
3
votes
1
reply
4.7k
views
Answer:
A: AWK: if value falls within a range, print sum of values
8.2 years ago by
Alex Reynolds
36k
4
votes
0
replies
15k
views
Answer:
A: Removing rows with duplicate values based on 1 or more key values - linux awk
8.2 years ago by
Alex Reynolds
36k
17
votes
10
replies
28k
views
6 follow
Converting TCGA expression data from FPKM to TPM
TCGA
TPM
FPKM
expression
RNA-seq
updated 3.2 years ago by
Ram
45k • written 10.1 years ago by
Alex Reynolds
36k
1
vote
0
replies
8.6k
views
Comment:
C: military application of bioinformatics
8.2 years ago by
Alex Reynolds
36k
0
votes
1
reply
1.6k
views
Answer:
A: Is there a sequence alignment tool that will give an output of all "good" alignm
8.2 years ago by
Alex Reynolds
36k
2
votes
0
replies
6.5k
views
Answer:
A: Genome Browser suggestions
8.2 years ago by
Alex Reynolds
36k
0
votes
0
replies
3.8k
views
Comment:
C: About bedtools closest command line output understanding
8.2 years ago by
Alex Reynolds
36k
0
votes
0
replies
2.9k
views
Comment:
C: code for text file parsing
8.2 years ago by
Alex Reynolds
36k
2
votes
1
reply
2.9k
views
Answer:
A: code for text file parsing
8.2 years ago by
Alex Reynolds
36k
0
votes
0
replies
2.2k
views
Answer:
A: simple statistics question
8.2 years ago by
Alex Reynolds
36k
4
votes
1
reply
105k
views
Answer:
A: Selecting Random Pairs From Fastq?
8.2 years ago by
Alex Reynolds
36k
0
votes
0
replies
15k
views
Comment:
C: Extracting randomly subset of fastq reads from a huge file
8.2 years ago by
Alex Reynolds
36k
0
votes
0
replies
2.9k
views
Comment:
C: code for text file parsing
8.3 years ago by
Alex Reynolds
36k
0
votes
0
replies
15k
views
Comment:
C: Extracting randomly subset of fastq reads from a huge file
8.3 years ago by
Alex Reynolds
36k
0
votes
0
replies
3.6k
views
Comment:
C: R: How to loop to extract all sequences within specific positions?
8.3 years ago by
Alex Reynolds
36k
1
vote
0
replies
2.7k
views
Comment:
C: Bedtools merge only part of feature that overlaps, not whole feature
8.3 years ago by
Alex Reynolds
36k
1
vote
1
reply
3.9k
views
Answer:
A: Average intron length in Drosophila melagnoster
8.3 years ago by
Alex Reynolds
36k
0
votes
0
replies
2.0k
views
Comment:
C: Find "mean" cluster positions after random sampling of genomic events
8.3 years ago by
Alex Reynolds
36k
3
votes
1
reply
2.7k
views
Answer:
A: Bedtools merge only part of feature that overlaps, not whole feature
8.3 years ago by
Alex Reynolds
36k
3
votes
0
replies
9.2k
views
Answer:
A: Finding Kmers From Fasta File
8.3 years ago by
Alex Reynolds
36k
1
vote
0
replies
4.2k
views
Answer:
A: How to merge bedGraph records which are next to each other and have the same sco
8.3 years ago by
Alex Reynolds
36k
0
votes
0
replies
3.0k
views
Comment:
C: manipulating BED occupancy files' intervals
8.3 years ago by
Alex Reynolds
36k
0
votes
0
replies
3.6k
views
Answer:
A: blast+ and GnuTLS errors on Mac
8.3 years ago by
Alex Reynolds
36k
3
votes
0
replies
2.4k
views
Answer:
A: extract the number of reads around TSS
8.3 years ago by
Alex Reynolds
36k
0
votes
0
replies
5.2k
views
Comment:
C: How to extract all the simple repeats from the hg19 reference genome
8.3 years ago by
Alex Reynolds
36k
2
votes
1
reply
5.2k
views
Answer:
A: How to extract all the simple repeats from the hg19 reference genome
8.3 years ago by
Alex Reynolds
36k
1
vote
0
replies
2.5k
views
Answer:
A: Obtaining .bed list of exons of chr17
8.3 years ago by
Alex Reynolds
36k
1
vote
1
reply
2.0k
views
Comment:
C: Find "mean" cluster positions after random sampling of genomic events
8.3 years ago by
Alex Reynolds
36k
2
votes
0
replies
3.8k
views
Answer:
A: Cases where indexing is efficient for read retrieval
8.3 years ago by
Alex Reynolds
36k
1
vote
1
reply
19k
views
Comment:
C: convert human gene names to ensembl ID
8.3 years ago by
Alex Reynolds
36k
2,902 results • Page
31 of 59
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