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4
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3.0k
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Answer: A: chromosome binning to average expression of genes in each bin
9.1 years ago by Alex Reynolds 36k
3
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0
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13k
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Answer: A: How To Count Genes In Genomic Regions Using A Gtf/Gff3 And A Bed File Of Regions
9.1 years ago by Alex Reynolds 36k
1
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1
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3.1k
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Answer: A: Split the Gff file based on the strand information
9.1 years ago by Alex Reynolds 36k
0
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0
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4.4k
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Answer: A: Sending multiple REST commands over the same URL connection
9.1 years ago by Alex Reynolds 36k
0
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0
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6.4k
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Answer: A: Difference between sortBed in bedtools and sort in unix
9.1 years ago by Alex Reynolds 36k
3
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1
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4.6k
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Comment: C: Consensus of multiple BED files
9.2 years ago by Alex Reynolds 36k
0
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0
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3.6k
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Answer: A: Use bedtool to get number of shared features from intersetions
9.2 years ago by Alex Reynolds 36k
1
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0
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4.5k
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Comment: C: Extracting data from bigWig/BED using threshold?
9.2 years ago by Alex Reynolds 36k
4
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1
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4.5k
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Answer: A: Extracting data from bigWig/BED using threshold?
9.2 years ago by Alex Reynolds 36k
0
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0
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3.7k
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Answer: A: Extract all BED intervals between genomic coordinates
9.2 years ago by Alex Reynolds 36k
0
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0
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4.5k
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Comment: C: Extracting data from bigWig/BED using threshold?
9.2 years ago by Alex Reynolds 36k
0
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0
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3.5k
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Comment: C: Are there services/java libs I can use to upload files automatically for UCSC di
9.2 years ago by Alex Reynolds 36k
0
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0
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2.1k
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Comment: C: Intermediate range calculation from files
9.2 years ago by Alex Reynolds 36k
0
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1
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2.1k
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Answer: A: Intermediate range calculation from files
9.2 years ago by Alex Reynolds 36k
0
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0
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5.3k
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Comment: C: Cubemaker - visualize three-dimensional datasets via the web
9.2 years ago by Alex Reynolds 36k
2
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1
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3.5k
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Answer: A: Are there services/java libs I can use to upload files automatically for UCSC di
9.2 years ago by Alex Reynolds 36k
5
votes
1
reply
17k
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Answer: A: find positions of a short sequence in a genome
9.2 years ago by Alex Reynolds 36k
1
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1
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9.9k
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Comment: C: Bed file: merging intervals that overlap a certain percentage
9.2 years ago by Alex Reynolds 36k
0
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1
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17k
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Comment: C: find positions of a short sequence in a genome
9.2 years ago by Alex Reynolds 36k
0
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0
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17k
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Comment: C: find positions of a short sequence in a genome
9.2 years ago by Alex Reynolds 36k
2
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0
replies
17k
views
Comment: C: find positions of a short sequence in a genome
9.2 years ago by Alex Reynolds 36k
1
vote
1
reply
17k
views
Comment: C: find positions of a short sequence in a genome
9.2 years ago by Alex Reynolds 36k
2
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0
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3.5k
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Answer: A: Finding SNPs per gene for SNP Density in UNIX
9.2 years ago by Alex Reynolds 36k
13
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0
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5.7k
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Answer: A: How can I Get png figures of UCSC genome browser automatically?
9.3 years ago by Alex Reynolds 36k
1
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0
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3.3k
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Answer: A: Subset multiple FASTA with a set of intervals provided in a BED/GFF file?
9.3 years ago by Alex Reynolds 36k
4
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1
reply
8.9k
views
Answer: A: Pick random position from specific genomic regions
9.3 years ago by Alex Reynolds 36k
5
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0
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2.9k
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Answer: A: How to quickly obtain a BED file of genes using their gene symbols?
9.3 years ago by Alex Reynolds 36k
0
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0
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2.7k
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Comment: C: How to plot workflow as image
9.3 years ago by Alex Reynolds 36k
1
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0
replies
5.3k
views
Answer: A: Tools to draw cell figures
9.3 years ago by Alex Reynolds 36k
0
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0
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2.7k
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Comment: C: problems in deviding genome to non-overlapping bins and count genes
9.3 years ago by Alex Reynolds 36k
0
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1
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2.7k
views
Answer: A: problems in deviding genome to non-overlapping bins and count genes
9.3 years ago by Alex Reynolds 36k
0
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1
reply
2.2k
views
Comment: C: calculating conservation depth of multiple regions(in form of bed coordinates)
9.3 years ago by Alex Reynolds 36k
0
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0
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2.4k
views
Comment: C: Remove genes that each of a gene with multiple SNVs
9.3 years ago by Alex Reynolds 36k
1
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1
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2.4k
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Answer: A: Remove genes that each of a gene with multiple SNVs
9.3 years ago by Alex Reynolds 36k
1
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0
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14k
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Answer: A: Programs of UCSC utilites
9.3 years ago by Alex Reynolds 36k
4
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0
replies
14k
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Answer: Answer: Programs of UCSC utilites
4.4 years ago by Alex Reynolds 36k
22
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3
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21k
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Answer: Answer: BEDOPS gtf2bed conversion error with Ensembl GTF
4.3 years ago by Alex Reynolds 36k
0
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0
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3.1k
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Answer: A: bed file intersection overlapping regions in at least x files
9.3 years ago by Alex Reynolds 36k
3
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0
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7.0k
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Answer: A: Splitting bed file chromosome wise into a text file with chromosome name
9.3 years ago by Alex Reynolds 36k
1
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0
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1.5k
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Answer: A: Compare a long list of BEDFiles against a whole genome/ chromosome ?
9.3 years ago by Alex Reynolds 36k
0
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0
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4.9k
views
Answer: A: condition bedtools on name column
9.3 years ago by Alex Reynolds 36k
1
vote
1
reply
2.4k
views
Answer: A: Find R color reference for colors in a palette?
9.3 years ago by Alex Reynolds 36k
1
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0
replies
2.5k
views
Answer: A: Extracting reads outside the boundaries in a BED file
9.3 years ago by Alex Reynolds 36k
7
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2
replies
5.7k
views
Answer: A: It seems that 'fastuniq' does not support fq.gz files. How to solve this except
9.4 years ago by Alex Reynolds 36k
1
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0
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12k
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Comment: C: Annotate Regions In Bed File With Nearest Downstream Gene
9.4 years ago by Alex Reynolds 36k
2
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0
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3.7k
views
Comment: C: Presence of both forward and reverse motifs in transcription factor binding site
9.4 years ago by Alex Reynolds 36k
1
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0
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3.7k
views
Comment: C: Presence of both forward and reverse motifs in transcription factor binding site
9.4 years ago by Alex Reynolds 36k
0
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0
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4.7k
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Comment: C: Merge bed files, keep the peak count
9.4 years ago by Alex Reynolds 36k
4
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2
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4.7k
views
Answer: A: Merge bed files, keep the peak count
9.5 years ago by Alex Reynolds 36k
2
votes
2
replies
3.3k
views
News: ENCODE 2015: Research Applications and Users Meeting
workshop mouse-encode encode
updated 2.7 years ago by 45k • written 10.5 years ago by 36k
2,902 results • Page 40 of 59
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