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Showing :
answers
3
votes
0
replies
1.5k
views
Answer:
A: Annotating gene ID and genomic features from bed files
4.3 years ago by
Alex Reynolds
35k
1
vote
1
reply
2.3k
views
Answer:
A: motif for TF within CTCF boundary
updated 4.3 years ago by
Ram
43k • written 9.9 years ago by
Alex Reynolds
35k
2
votes
1
reply
5.0k
views
Answer:
A: JASPAR, TFs and their target genes
updated 4.3 years ago by
Ram
43k • written 9.9 years ago by
Alex Reynolds
35k
0
votes
0
replies
2.9k
views
Answer:
A: How to get karyotype information for a certain section of genome.
updated 4.4 years ago by
Ram
43k • written 9.9 years ago by
Alex Reynolds
35k
0
votes
0
replies
13k
views
Answer:
A: Samtools or Bedtools: How to filter a bam file with a bed file using strand info
updated 4.4 years ago by
Ram
43k • written 9.9 years ago by
Alex Reynolds
35k
2
votes
2
replies
2.4k
views
Answer:
C: Mapping bed file to the ends of bed features of another file
updated 4.4 years ago by
Ram
43k • written 10.0 years ago by
Alex Reynolds
35k
2
votes
0
replies
4.4k
views
Answer:
A: Advantages of Biobase's TRANSFAC over and above what is freely available?
updated 4.4 years ago by
Ram
43k • written 10.0 years ago by
Alex Reynolds
35k
0
votes
1
reply
2.0k
views
Answer:
Answer: Sequence filtration based on length
updated 14 months ago by
Ram
43k • written 10.0 years ago by
Alex Reynolds
35k
0
votes
0
replies
2.2k
views
Answer:
A: For a given set of coordinates is there a simple fast way of determining the 'su
updated 4.4 years ago by
Ram
43k • written 10.0 years ago by
Alex Reynolds
35k
0
votes
1
reply
16k
views
Answer:
A: How To Randomly Sample A Subset Of Lines From A Bed File
updated 4.4 years ago by
Ram
43k • written 10.0 years ago by
Alex Reynolds
35k
3
votes
2
replies
13k
views
Answer:
A: What is the best programming language for NGS data analysis pipeline development
updated 4.4 years ago by
Ram
43k • written 10.0 years ago by
Alex Reynolds
35k
0
votes
0
replies
2.1k
views
Answer:
A: Anyone used FIMO from MEME before?
updated 4.4 years ago by
Ram
43k • written 10.0 years ago by
Alex Reynolds
35k
0
votes
1
reply
2.7k
views
Answer:
A: Download large tracks on the UCSC browser
updated 4.4 years ago by
Ram
43k • written 10.0 years ago by
Alex Reynolds
35k
1
vote
1
reply
15k
views
Answer:
A: Exploring cancer mutation data portals
updated 4.4 years ago by
Ram
43k • written 8.3 years ago by
Alex Reynolds
35k
2
votes
0
replies
7.8k
views
Answer:
A: Download all files from a web directory which requires login ID and password by
4.4 years ago by
Alex Reynolds
35k
3
votes
2
replies
9.2k
views
Answer:
A: Most effective way to merge individual VCF files into VCF files merged by chromo
updated 4.4 years ago by
Ram
43k • written 10.0 years ago by
Alex Reynolds
35k
2
votes
0
replies
2.3k
views
Answer:
A: How to use ENCODE data to find histone marks overlapping with 450k data
updated 4.4 years ago by
Ram
43k • written 10.0 years ago by
Alex Reynolds
35k
0
votes
0
replies
2.6k
views
Answer:
A: Create Image From Mapping Region
updated 4.4 years ago by
Ram
43k • written 10.0 years ago by
Alex Reynolds
35k
2
votes
0
replies
5.6k
views
Answer:
A: EMBOSS Needle: Read sequences from stdin
updated 4.4 years ago by
Ram
43k • written 10.0 years ago by
Alex Reynolds
35k
4
votes
0
replies
4.0k
views
Answer:
A: Is there a ready list of all SNPs in UCSC?
updated 4.4 years ago by
Ram
43k • written 10.0 years ago by
Alex Reynolds
35k
0
votes
0
replies
4.5k
views
Answer:
A: How to make this kind of 3-D plotting for cancer subclones ? (picture attached)
updated 4.4 years ago by
Ram
43k • written 10.0 years ago by
Alex Reynolds
35k
4
votes
0
replies
6.1k
views
Answer:
Answer: Bedgraph to bed file conversion
updated 2.6 years ago by
Ram
43k • written 10.0 years ago by
Alex Reynolds
35k
3
votes
1
reply
2.6k
views
Answer:
A: Do these warning messages during my bedops install mean bedops won't work proper
updated 4.4 years ago by
Ram
43k • written 10.0 years ago by
Alex Reynolds
35k
3
votes
2
replies
7.1k
views
Answer:
A: How to query for a specific motif upstream of each of the gene in a list?
updated 4.4 years ago by
Ram
43k • written 10.0 years ago by
Alex Reynolds
35k
0
votes
1
reply
3.4k
views
Answer:
A: cell sizes in R plots
updated 4.4 years ago by
Ram
43k • written 10.0 years ago by
Alex Reynolds
35k
1
vote
0
replies
3.0k
views
Answer:
A: binding close to gene
updated 4.4 years ago by
Ram
43k • written 10.0 years ago by
Alex Reynolds
35k
2
votes
0
replies
7.2k
views
Answer:
A: Reading gene expression data from an Excel spreadsheet into a python dictionary
updated 4.4 years ago by
Ram
43k • written 10.0 years ago by
Alex Reynolds
35k
0
votes
1
reply
5.7k
views
Answer:
A: ngs.plot: Quick mining and visualization of next-generation sequencing data by i
updated 4.4 years ago by
Ram
43k • written 10.0 years ago by
Alex Reynolds
35k
2
votes
0
replies
2.7k
views
Answer:
A: Identify overlapping coordinates
updated 4.4 years ago by
Ram
43k • written 10.0 years ago by
Alex Reynolds
35k
0
votes
0
replies
5.8k
views
Answer:
A: Drug information databases
updated 4.4 years ago by
Ram
43k • written 10.1 years ago by
Alex Reynolds
35k
3
votes
1
reply
15k
views
Answer:
A: Extracting regions from .bam file using a .gff or .gtf file
updated 4.4 years ago by
Ram
43k • written 10.1 years ago by
Alex Reynolds
35k
5
votes
0
replies
2.5k
views
Answer:
A: Locating SNP's to genes
updated 4.4 years ago by
Ram
43k • written 10.1 years ago by
Alex Reynolds
35k
2
votes
0
replies
7.3k
views
Answer:
A: error with bedtools slop
updated 4.4 years ago by
Ram
43k • written 10.1 years ago by
Alex Reynolds
35k
3
votes
0
replies
5.8k
views
Answer:
A: How To Find Upstream/Downstream Bound Features With A Chip-Seq Analysis In Galax
updated 4.4 years ago by
Ram
43k • written 10.1 years ago by
Alex Reynolds
35k
1
vote
0
replies
3.8k
views
Answer:
A: Common genomic intervals in R
updated 4.4 years ago by
Ram
43k • written 10.1 years ago by
Alex Reynolds
35k
1
vote
0
replies
7.9k
views
Answer:
A: Extracting Random Sequences From A Large Fasta File Using Bioperl
updated 4.4 years ago by
Ram
43k • written 10.1 years ago by
Alex Reynolds
35k
0
votes
1
reply
1.9k
views
Answer:
A: Good way of plotting a statistic with error bars
updated 4.4 years ago by
Ram
43k • written 8.3 years ago by
Alex Reynolds
35k
2
votes
0
replies
3.0k
views
Answer:
A: Bedops V2.4 Released
updated 4.4 years ago by
Ram
43k • written 10.2 years ago by
Alex Reynolds
35k
6
votes
1
reply
7.7k
views
Answer:
A: Intersect multiple BED files
updated 4.4 years ago by
Ram
43k • written 8.3 years ago by
Alex Reynolds
35k
0
votes
0
replies
3.4k
views
Answer:
A: Parsing GENCODE GTF to simpler BED files: am I reinventing the wheel ?
updated 4.4 years ago by
Ram
43k • written 8.3 years ago by
Alex Reynolds
35k
3
votes
1
reply
43k
views
Answer:
A: How To Get Bed File Containing Exons Of Canonical Transcripts And Their Correspo
updated 4.4 years ago by
Ram
43k • written 10.3 years ago by
Alex Reynolds
35k
2
votes
0
replies
21k
views
Answer:
A: How To Write Bash Script To Download Files From Specific Databse
updated 4.4 years ago by
Ram
43k • written 10.3 years ago by
Alex Reynolds
35k
1
vote
0
replies
2.4k
views
Answer:
A: Access Hash With 250M Entries
updated 4.4 years ago by
Ram
43k • written 10.3 years ago by
Alex Reynolds
35k
1
vote
1
reply
2.4k
views
Answer:
A: Number Of Species Is Restricted By Genome Combinatorics?
updated 4.4 years ago by
Ram
43k • written 10.4 years ago by
Alex Reynolds
35k
2
votes
0
replies
2.7k
views
Answer:
A: Do wiggle files have to be sorted?
updated 4.4 years ago by
Ram
43k • written 8.4 years ago by
Alex Reynolds
35k
2
votes
0
replies
2.7k
views
Answer:
A: How To Study The Characteristics Of Neighboring Genes (Of A Query) Of A Bacteria
updated 4.4 years ago by
Ram
43k • written 10.5 years ago by
Alex Reynolds
35k
3
votes
1
reply
4.9k
views
Answer:
A: Filtering Tss List To Remove Tss Within X #Bp From One Another
updated 4.4 years ago by
Ram
43k • written 10.5 years ago by
Alex Reynolds
35k
3
votes
1
reply
9.1k
views
Answer:
A: Quickly Plotting Distribution Of Points From Bed File?
updated 4.4 years ago by
Ram
43k • written 10.7 years ago by
Alex Reynolds
35k
3
votes
2
replies
5.4k
views
Answer:
A: Programming Challenge: Divide The Human Genome Among X Cores, Taking Into Accoun
updated 4.4 years ago by
Ram
43k • written 10.8 years ago by
Alex Reynolds
35k
1
vote
1
reply
5.9k
views
Answer:
A: Produce Bed File With Gaps In Coverage From A Bam File
updated 4.4 years ago by
Ram
43k • written 10.8 years ago by
Alex Reynolds
35k
1,474 results • Page
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