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What aren't hg19-hg38 liftOver chains symmetrical?
hg38 hg19 liftover
updated 3.8 years ago by ▴ 30 • written 3.8 years ago by ★ 3.0k
1
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1
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1.3k
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Answer: Answer: BAM - number of mapping positions per read
3.8 years ago by d-cameron ★ 3.0k
2
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0
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1.7k
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Answer: Answer: which software is the best to look at clinic structural variation in whole genom
4.0 years ago by d-cameron ★ 3.0k
0
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0
replies
962
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Answer: Answer: Detecting NUMTS (nuclear mitochondrial sequences) in the whole genome sequenced
4.1 years ago by d-cameron ★ 3.0k
0
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0
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5.6k
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Comment: Comment: GRIDSS: the Genomic Rearrangement IDentification Software Suite
4.1 years ago by d-cameron ★ 3.0k
0
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0
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2.6k
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Comment: Comment: Issue with samtools reheader, bam file
4.2 years ago by d-cameron ★ 3.0k
1
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0
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1.8k
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Answer: Answer: Many TLENs in a SAM file seem much too big
4.2 years ago by d-cameron ★ 3.0k
0
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0
replies
1.2k
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Comment: Comment: adding a contig fasta to reference genome fasta
4.2 years ago by d-cameron ★ 3.0k
0
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0
replies
2.6k
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Comment: Comment: Issue with samtools reheader, bam file
4.2 years ago by d-cameron ★ 3.0k
0
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1
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2.6k
views
Answer: Answer: Issue with samtools reheader, bam file
4.2 years ago by d-cameron ★ 3.0k
0
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0
replies
5.5k
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Comment: Comment: BAM File, Change chromosome notation
4.2 years ago by d-cameron ★ 3.0k
0
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0
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5.5k
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Answer: Answer: BAM File, Change chromosome notation
4.2 years ago by d-cameron ★ 3.0k
0
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0
replies
6.6k
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Comment: Comment: BWA MEM Definition of a Primary Alignment
4.3 years ago by d-cameron ★ 3.0k
0
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1
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15k
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Comment: Comment: samtools multithreads
4.5 years ago by d-cameron ★ 3.0k
2
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0
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1.4k
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Answer: A: Soft Clipped read 3' end position
4.7 years ago by d-cameron ★ 3.0k
0
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0
replies
1.6k
views
Answer: A: bwa aln writing speed became very slow after being very fast. What is the patter
4.8 years ago by d-cameron ★ 3.0k
1
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0
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1.5k
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Answer: A: Tools to call Large indels/structural variations in whole genome BAM data of mo
4.8 years ago by d-cameron ★ 3.0k
1
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0
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2.7k
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Comment: C: Revert bam to fastq
5.0 years ago by d-cameron ★ 3.0k
0
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1
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1.7k
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Comment: A: what the mean of Genomic content
5.0 years ago by d-cameron ★ 3.0k
1
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1
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1.2k
views
Answer: A: Is it possible to compute the Loss of heterocigosity from the Copy number variat
5.0 years ago by d-cameron ★ 3.0k
0
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0
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2.7k
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Answer: A: WES or WGS
5.0 years ago by d-cameron ★ 3.0k
2
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1
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1.6k
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Answer: A: Structural Variation data of ICGC/PCAWG: 2,658 cancers across 38 tumour types
5.0 years ago by d-cameron ★ 3.0k
0
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0
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3.3k
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Answer: A: How to Update/Edit INFO field of VCF
updated 5.0 years ago by 45k • written 5.0 years ago by ★ 3.0k
2
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1
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3.6k
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Answer: A: Is there a hybrid aligner that uses both long and short reads to align to a refe
5.1 years ago by d-cameron ★ 3.0k
0
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0
replies
862
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Are bwa alt contigs controlled purely by idxbase.alt?
bwa
5.1 years ago by d-cameron ★ 3.0k
1
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1
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1.5k
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Answer: A: diffrent between CNV and pcr duplicate
5.1 years ago by d-cameron ★ 3.0k
0
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0
replies
1.5k
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Comment: C: HPV EBV typing from cancer genome data
5.1 years ago by d-cameron ★ 3.0k
5
votes
0
replies
16k
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Answer: A: How to interpret variant allele frequency?
5.1 years ago by d-cameron ★ 3.0k
2
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1
reply
1.5k
views
Answer: A: HPV EBV typing from cancer genome data
5.1 years ago by d-cameron ★ 3.0k
0
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0
replies
2.6k
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Comment: C: how to output the best alignment rather than multiple alignments for each read i
5.4 years ago by d-cameron ★ 3.0k
0
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0
replies
2.2k
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Comment: C: Why Samtools view don't extract sequence out of the given region?
5.4 years ago by d-cameron ★ 3.0k
1
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0
replies
1.4k
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Answer: A: Is structure variations detected in DNA panel sequencing should also be detected
5.4 years ago by d-cameron ★ 3.0k
0
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0
replies
2.1k
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Answer: A: The center in scatter plot generated by CNVkit looks off
5.4 years ago by d-cameron ★ 3.0k
0
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0
replies
2.1k
views
Comment: C: The center in scatter plot generated by CNVkit looks off
5.4 years ago by d-cameron ★ 3.0k
0
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0
replies
1.1k
views
Answer: A: [IGV] Is it an aneuploidy ?
5.4 years ago by d-cameron ★ 3.0k
0
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1
reply
2.1k
views
Comment: C: The center in scatter plot generated by CNVkit looks off
5.4 years ago by d-cameron ★ 3.0k
0
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0
replies
3.0k
views
Answer: A: Split bam into chunks but keep reads mapped to the same region together
5.5 years ago by d-cameron ★ 3.0k
0
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1
reply
2.1k
views
Comment: C: The center in scatter plot generated by CNVkit looks off
5.5 years ago by d-cameron ★ 3.0k
0
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0
replies
2.3k
views
Answer: A: What's the best way to serve VCF data on web?
5.5 years ago by d-cameron ★ 3.0k
0
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0
replies
1.2k
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Comment: C: Extract SV indicating pair-end reads
5.5 years ago by d-cameron ★ 3.0k
0
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0
replies
1.2k
views
Comment: C: Extract SV indicating pair-end reads
5.5 years ago by d-cameron ★ 3.0k
1
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1
reply
1.2k
views
Answer: A: Extract SV indicating pair-end reads
5.5 years ago by d-cameron ★ 3.0k
0
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0
replies
3.1k
views
Comment: C: fusion detection for DNA Sequencing data
5.5 years ago by d-cameron ★ 3.0k
0
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1
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3.1k
views
Answer: A: fusion detection for DNA Sequencing data
5.5 years ago by d-cameron ★ 3.0k
0
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1
reply
10k
views
Comment: C: bwa mem memory allocation, threads and nodes
5.6 years ago by d-cameron ★ 3.0k
2
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0
replies
10k
views
Answer: A: bwa mem memory allocation, threads and nodes
5.6 years ago by d-cameron ★ 3.0k
3
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1
reply
2.0k
views
Answer: A: Approach to structural variation analysis - case vs control
5.9 years ago by d-cameron ★ 3.0k
0
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0
replies
1.7k
views
Answer: A: value of TLEN not conforming to the SAM specifications
6.0 years ago by d-cameron ★ 3.0k
0
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1
reply
2.5k
views
Comment: C: Number of Tandem and Interspersed duplications
6.0 years ago by d-cameron ★ 3.0k
0
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1
reply
2.5k
views
Comment: C: Number of Tandem and Interspersed duplications
6.0 years ago by d-cameron ★ 3.0k
327 results • Page 2 of 7
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