Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
4.6k
views
Comment: C: Extract read sequence from BAM files depending on the alignment coordinates
5.2 years ago by Vitis ★ 2.5k
0
votes
2
replies
4.6k
views
Comment: C: Extract read sequence from BAM files depending on the alignment coordinates
5.2 years ago by Vitis ★ 2.5k
1
vote
0
replies
1.1k
views
Comment: C: Oxford Nanopore for structural variation calling
5.2 years ago by Vitis ★ 2.5k
1
vote
1
reply
1.1k
views
Comment: C: Oxford Nanopore for structural variation calling
5.2 years ago by Vitis ★ 2.5k
1
vote
1
reply
940
views
Answer: A: identify genomic positions susceptible to alignment artifacts with bwa-mem align
5.2 years ago by Vitis ★ 2.5k
4
votes
1
reply
1.1k
views
Answer: A: Selecting pedigree informative SNPs
5.3 years ago by Vitis ★ 2.5k
2
votes
1
reply
14k
views
Answer: A: snpEff building new database ERROR
5.3 years ago by Vitis ★ 2.5k
1
vote
0
replies
14k
views
Comment: C: snpEff building new database ERROR
5.3 years ago by Vitis ★ 2.5k
0
votes
0
replies
2.9k
views
Comment: C: samtools sort truncated
5.3 years ago by Vitis ★ 2.5k
0
votes
1
reply
2.9k
views
Answer: A: samtools sort truncated
5.3 years ago by Vitis ★ 2.5k
0
votes
0
replies
14k
views
Comment: C: snpEff building new database ERROR
5.3 years ago by Vitis ★ 2.5k
2
votes
0
replies
14k
views
Answer: A: snpEff building new database ERROR
5.3 years ago by Vitis ★ 2.5k
1
vote
2
replies
14k
views
Comment: C: snpEff building new database ERROR
5.3 years ago by Vitis ★ 2.5k
0
votes
1
reply
4.4k
views
Answer: A: Filtering sam/bam by using CIGAR deletion sites
5.3 years ago by Vitis ★ 2.5k
0
votes
1
reply
14k
views
Comment: A: snpEff building new database ERROR
5.3 years ago by Vitis ★ 2.5k
0
votes
0
replies
1.4k
views
Comment: C: How to identify translocation events within cell lines
5.3 years ago by Vitis ★ 2.5k
1
vote
1
reply
1.4k
views
Comment: C: How to identify translocation events within cell lines
5.3 years ago by Vitis ★ 2.5k
1
vote
1
reply
1.4k
views
Answer: A: How to identify translocation events within cell lines
5.3 years ago by Vitis ★ 2.5k
0
votes
0
replies
1.5k
views
Answer: A: Alternative to mummerplot
5.3 years ago by Vitis ★ 2.5k
0
votes
1
reply
5.2k
views
Answer: A: Identification of the sequence insertion site in the genome
5.3 years ago by Vitis ★ 2.5k
0
votes
1
reply
1.1k
views
Answer: A: Aligning transcript with known position for SNP to draft genome to find the posi
5.3 years ago by Vitis ★ 2.5k
1
vote
0
replies
1.7k
views
Answer: A: processing amplicon seq data from miseq
5.3 years ago by Vitis ★ 2.5k
0
votes
0
replies
1.6k
views
Comment: C: I meet some problem for using Deseq2.
5.3 years ago by Vitis ★ 2.5k
2
votes
0
replies
1.8k
views
Answer: A: How to identify a species is autopolyploid or allopolyploid by high-throughput s
5.3 years ago by Vitis ★ 2.5k
1
vote
0
replies
1.1k
views
Comment: C: some good practices doubts
5.3 years ago by Vitis ★ 2.5k
0
votes
0
replies
2.9k
views
Comment: C: bigwig file to bed graph
5.3 years ago by Vitis ★ 2.5k
0
votes
0
replies
1.0k
views
Answer: A: Mapping Gene Models Back to a Reference Genome of Closely Related Species
5.3 years ago by Vitis ★ 2.5k
2
votes
0
replies
977
views
Comment: C: Did both mitochondrial DNA and the Y chromosome coalesce within the last several
5.3 years ago by Vitis ★ 2.5k
0
votes
1
reply
1.9k
views
Comment: C: Creating A Phylogenetic Tree From A Multiple Sequence Alignment.
5.3 years ago by Vitis ★ 2.5k
0
votes
0
replies
3.0k
views
Comment: C: several effect for one SNP annotated by SNPeff
5.4 years ago by Vitis ★ 2.5k
1
vote
1
reply
3.0k
views
Comment: C: several effect for one SNP annotated by SNPeff
5.4 years ago by Vitis ★ 2.5k
3
votes
2
replies
2.1k
views
Meaning of the 5th column in repeatmasker BED format results
genome
updated 5.4 years ago by 35k • written 5.4 years ago by ★ 2.5k
0
votes
0
replies
2.7k
views
Comment: C: Annotate VCF on specific transcripts (ANN field)
5.4 years ago by Vitis ★ 2.5k
1
vote
1
reply
1.5k
views
Answer: A: Making BAM or SAM files equivalent
5.4 years ago by Vitis ★ 2.5k
0
votes
0
replies
2.3k
views
Comment: C: Gene cluster visualization
5.4 years ago by Vitis ★ 2.5k
1
vote
0
replies
2.1k
views
Comment: C: bedtools multicov - tab-delimited bam files?
5.4 years ago by Vitis ★ 2.5k
2
votes
0
replies
3.7k
views
Answer: A: How can I tell if there is CNV for specific gene in IGV?
5.4 years ago by Vitis ★ 2.5k
0
votes
0
replies
1.1k
views
Answer: A: Need help to separate a genome in different x coverage
5.5 years ago by Vitis ★ 2.5k
0
votes
1
reply
5.0k
views
Comment: C: Is there a tool or method for phasing a VCF based on an already phased BAM?
5.5 years ago by Vitis ★ 2.5k
1
vote
1
reply
2.1k
views
Answer: A: Depth of Coverage without Read Overlap
5.5 years ago by Vitis ★ 2.5k
2
votes
1
reply
5.0k
views
Answer: A: Is there a tool or method for phasing a VCF based on an already phased BAM?
5.5 years ago by Vitis ★ 2.5k
0
votes
0
replies
2.0k
views
Comment: C: Beagle 4.1 - phasing and IBD using multiple chromosomes
5.5 years ago by Vitis ★ 2.5k
2
votes
0
replies
4.1k
views
Answer: A: compare groups/populations - vcf files
5.5 years ago by Vitis ★ 2.5k
0
votes
0
replies
3.9k
views
Comment: C: Finding exons and introns sequences
5.5 years ago by Vitis ★ 2.5k
0
votes
1
reply
3.9k
views
Comment: C: Finding exons and introns sequences
5.5 years ago by Vitis ★ 2.5k
0
votes
0
replies
3.5k
views
Comment: C: Perl/Python script: phased vcf to phased ped
5.5 years ago by Vitis ★ 2.5k
0
votes
3
replies
3.5k
views
Comment: C: Perl/Python script: phased vcf to phased ped
updated 5.5 years ago by 11k • written 5.5 years ago by ★ 2.5k
0
votes
0
replies
2.4k
views
Answer: A: How to extract coordinate of hard and soft clipped long reads ?
5.5 years ago by Vitis ★ 2.5k
1
vote
1
reply
3.9k
views
Answer: A: finding exons and introns sequences
5.5 years ago by Vitis ★ 2.5k
0
votes
0
replies
1.7k
views
Answer: A: Pulling out the reads associated with a vcf line entry.
5.5 years ago by Vitis ★ 2.5k
336 results • Page 3 of 7
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6