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5.5k
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Comment: C: Error when using Bedtools fisher on sorted bed files
updated 4.8 years ago by 44k • written 8.8 years ago by ★ 2.0k
1
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0
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12k
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Comment: C: Meaning of Chromatin state
updated 4.8 years ago by 44k • written 8.8 years ago by ★ 2.0k
7
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11
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9.1k
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7 follow
how to merge overlapping intervals in a bedgraph file
sequence bedtools
updated 2.2 years ago by 44k • written 9.0 years ago by ★ 2.0k
0
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0
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9.7k
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Comment: C: HOMER find motifs from BED data
updated 4.9 years ago by 44k • written 8.8 years ago by ★ 2.0k
0
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0
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3.0k
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Comment: C: Chipseq overlap of peaks
updated 4.9 years ago by 44k • written 9.0 years ago by ★ 2.0k
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0
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2.0k
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Answer: A: pipeline of analyses to identify functional loops of chromosomes
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 2.0k
0
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0
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3.0k
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Answer: A: Finding instances of motifs near peaks
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 2.0k
0
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0
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4.0k
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Comment: C: the "major" problem of gene identifiers conversion
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 2.0k
2
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1
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4.0k
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Answer: A: the "major" problem of gene identifiers conversion
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 2.0k
0
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0
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9.1k
views
Comment: C: how to merge overlapping intervals in a bedgraph file
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 2.0k
0
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0
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6.6k
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Comment: C: DNA binding site motif database
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 2.0k
0
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1
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4.5k
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Answer: A: count the number of transcription factor binding sites
updated 5.0 years ago by 44k • written 9.1 years ago by ★ 2.0k
0
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1
reply
3.5k
views
Comment: C: Associate peak score to gene
updated 5.0 years ago by 44k • written 9.1 years ago by ★ 2.0k
6
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0
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2.1k
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Answer: A: what is the meaning of "degenerative nature" of Chip-seq
updated 5.0 years ago by 44k • written 9.1 years ago by ★ 2.0k
1
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1
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3.5k
views
Answer: A: Associate peak score to gene
updated 5.0 years ago by 44k • written 9.1 years ago by ★ 2.0k
3
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2
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4.2k
views
Answer: A: Analysis Big Data from Hi-C--> a way to find significant interaction ?
updated 5.0 years ago by 44k • written 9.3 years ago by ★ 2.0k
1
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0
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9.8k
views
Answer: A: How do I compute the effective genome size?
updated 5.0 years ago by 44k • written 9.2 years ago by ★ 2.0k
0
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1
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6.7k
views
Comment: C: Making TSS plots for some genes for a particular histone mark
updated 5.0 years ago by 44k • written 9.2 years ago by ★ 2.0k
0
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0
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2.2k
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Answer: A: ChIP-Seq alignment with random site for duplicated
updated 5.0 years ago by 44k • written 9.3 years ago by ★ 2.0k
0
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0
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2.4k
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Answer: A: mapping PE or SE?
updated 5.1 years ago by 44k • written 9.4 years ago by ★ 2.0k
1
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0
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39k
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Comment: C: Efficient And Fastest Way To Sort Large (>100Gb) Bam Files?
updated 5.1 years ago by 44k • written 12.5 years ago by ★ 2.0k
1
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0
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4.0k
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Answer: A: Functional Classification Of Protein Complexes
updated 5.1 years ago by 44k • written 12.7 years ago by ★ 2.0k
4
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0
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6.1k
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Answer: A: Single Cell RNA Seq. Analysis
updated 5.6 years ago by 44k • written 5.6 years ago by ★ 2.0k
0
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1
reply
6.3k
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Answer: A: Cannot read loom file in scanpy
5.6 years ago by Fidel ★ 2.0k
3
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1
reply
5.4k
views
Answer: A: How quantitative is Chip-seq?
updated 7.1 years ago by 104k • written 8.5 years ago by ★ 2.0k
0
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0
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2.9k
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Comment: C: TAD calling with HiCExplorer - TypeError in hicFindTADs TAD_score
7.2 years ago by Fidel ★ 2.0k
1
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0
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2.9k
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Comment: C: TAD calling with HiCExplorer - TypeError in hicFindTADs TAD_score
7.2 years ago by Fidel ★ 2.0k
1
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0
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5.2k
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Comment: C: How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
7.8 years ago by Fidel ★ 2.0k
2
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1
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5.2k
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Answer: A: How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
7.8 years ago by Fidel ★ 2.0k
1
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1
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5.2k
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Comment: C: How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
7.8 years ago by Fidel ★ 2.0k
0
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1
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5.2k
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Comment: C: How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
7.8 years ago by Fidel ★ 2.0k
0
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1
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5.2k
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Comment: C: How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
7.8 years ago by Fidel ★ 2.0k
0
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1
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5.2k
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Comment: C: How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
7.8 years ago by Fidel ★ 2.0k
6
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1
reply
6.6k
views
Answer: A: Do specialized Hi-C databases exist?
7.8 years ago by Fidel ★ 2.0k
2
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0
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7.8k
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Answer: A: TUTORIALS about Hi-C data analysis
7.8 years ago by Fidel ★ 2.0k
8
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12
replies
5.2k
views
How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
bwa enzyme
7.8 years ago by Fidel ★ 2.0k
3
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0
replies
8.6k
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Answer: A: ChIP-Seq TSS Line Plot
8.0 years ago by Fidel ★ 2.0k
0
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0
replies
1.6k
views
Comment: C: Hi-C resolution and bin count > 0 for ICE correction
8.4 years ago by Fidel ★ 2.0k
2
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1
reply
2.2k
views
Answer: A: Finding histone modification enrichment specific loci using modENCODE data
8.4 years ago by Fidel ★ 2.0k
0
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0
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2.5k
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Comment: C: How to separate chip-seq peaks which are enriched for known TFs motifs from give
8.5 years ago by Fidel ★ 2.0k
2
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1
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2.5k
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Comment: C: Pysam: Determine intra-read-position of Base at Pileupsite
8.5 years ago by Fidel ★ 2.0k
0
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0
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3.6k
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Comment: C: Annotate each peak to gene starts within 10 kb of the peak with python ?
8.5 years ago by Fidel ★ 2.0k
0
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0
replies
4.4k
views
Comment: C: IGV resizing tracks
8.5 years ago by Fidel ★ 2.0k
1
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0
replies
2.2k
views
Answer: A: Error for read density visualization
8.5 years ago by Fidel ★ 2.0k
2
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0
replies
4.7k
views
Comment: C: Open-source tools for GO enrichment in non-model organisms
8.5 years ago by Fidel ★ 2.0k
5
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3
replies
53k
views
Comment: C: Visualization of ChIP-seq data using Heatmaps (Updated: 03/10/16)
8.6 years ago by Fidel ★ 2.0k
0
votes
0
replies
6.9k
views
Comment: C: Chip-Seq Peak hight difference between BED and BW file formats.
8.6 years ago by Fidel ★ 2.0k
3
votes
0
replies
2.7k
views
Answer: A: Paired-end data with different length
8.6 years ago by Fidel ★ 2.0k
1
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0
replies
2.6k
views
Comment: C: Separating gene list into chromatin domains and analysing separately within each
8.6 years ago by Fidel ★ 2.0k
4
votes
1
reply
53k
views
Comment: C: Visualization of ChIP-seq data using Heatmaps (Updated: 03/10/16)
8.6 years ago by Fidel ★ 2.0k
159 results • Page 1 of 4
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