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4.8k
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Comment: C: Error when using Bedtools fisher on sorted bed files
updated 3.7 years ago by 40k • written 7.6 years ago by ★ 2.0k
1
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0
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11k
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Comment: C: Meaning of Chromatin state
updated 3.7 years ago by 40k • written 7.6 years ago by ★ 2.0k
7
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11
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7.8k
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7 follow
how to merge overlapping intervals in a bedgraph file
sequence bedtools
updated 13 months ago by 40k • written 7.9 years ago by ★ 2.0k
0
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0
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8.1k
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Comment: C: HOMER find motifs from BED data
updated 3.8 years ago by 40k • written 7.7 years ago by ★ 2.0k
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0
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2.7k
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Comment: C: Chipseq overlap of peaks
updated 3.8 years ago by 40k • written 7.9 years ago by ★ 2.0k
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0
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1.7k
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Answer: A: pipeline of analyses to identify functional loops of chromosomes
updated 3.8 years ago by 40k • written 7.9 years ago by ★ 2.0k
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0
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2.8k
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Answer: A: Finding instances of motifs near peaks
updated 3.8 years ago by 40k • written 7.9 years ago by ★ 2.0k
0
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0
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3.2k
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Comment: C: the "major" problem of gene identifiers conversion
updated 3.8 years ago by 40k • written 7.9 years ago by ★ 2.0k
2
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1
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3.2k
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Answer: A: the "major" problem of gene identifiers conversion
updated 3.8 years ago by 40k • written 7.9 years ago by ★ 2.0k
0
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0
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7.8k
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Comment: C: how to merge overlapping intervals in a bedgraph file
updated 3.8 years ago by 40k • written 7.9 years ago by ★ 2.0k
0
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0
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6.0k
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Comment: C: DNA binding site motif database
updated 3.8 years ago by 40k • written 7.9 years ago by ★ 2.0k
0
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1
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4.0k
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Answer: A: count the number of transcription factor binding sites
updated 3.9 years ago by 40k • written 7.9 years ago by ★ 2.0k
0
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1
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3.1k
views
Comment: C: Associate peak score to gene
updated 3.9 years ago by 40k • written 7.9 years ago by ★ 2.0k
6
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0
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1.8k
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Answer: A: what is the meaning of "degenerative nature" of Chip-seq
updated 3.9 years ago by 40k • written 8.0 years ago by ★ 2.0k
1
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1
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3.1k
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Answer: A: Associate peak score to gene
updated 3.9 years ago by 40k • written 8.0 years ago by ★ 2.0k
3
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2
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3.5k
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Answer: A: Analysis Big Data from Hi-C--> a way to find significant interaction ?
updated 3.9 years ago by 40k • written 8.2 years ago by ★ 2.0k
1
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0
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8.3k
views
Answer: A: How do I compute the effective genome size?
updated 3.9 years ago by 40k • written 8.0 years ago by ★ 2.0k
0
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1
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5.5k
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Comment: C: Making TSS plots for some genes for a particular histone mark
updated 3.9 years ago by 40k • written 8.1 years ago by ★ 2.0k
0
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0
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1.9k
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Answer: A: ChIP-Seq alignment with random site for duplicated
updated 3.9 years ago by 40k • written 8.2 years ago by ★ 2.0k
0
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0
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2.1k
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Answer: A: mapping PE or SE?
updated 3.9 years ago by 40k • written 8.3 years ago by ★ 2.0k
1
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0
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36k
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Comment: C: Efficient And Fastest Way To Sort Large (>100Gb) Bam Files?
updated 4.0 years ago by 40k • written 11.4 years ago by ★ 2.0k
1
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0
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3.6k
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Answer: A: Functional Classification Of Protein Complexes
updated 4.0 years ago by 40k • written 11.6 years ago by ★ 2.0k
4
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0
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4.8k
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Answer: A: Single Cell RNA Seq. Analysis
updated 4.4 years ago by 40k • written 4.5 years ago by ★ 2.0k
0
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1
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5.5k
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Answer: A: Cannot read loom file in scanpy
4.5 years ago by Fidel ★ 2.0k
3
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1
reply
4.7k
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Answer: A: How quantitative is Chip-seq?
updated 6.0 years ago by 103k • written 7.4 years ago by ★ 2.0k
0
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0
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2.5k
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Comment: C: TAD calling with HiCExplorer - TypeError in hicFindTADs TAD_score
6.1 years ago by Fidel ★ 2.0k
1
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0
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2.5k
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Comment: C: TAD calling with HiCExplorer - TypeError in hicFindTADs TAD_score
6.1 years ago by Fidel ★ 2.0k
1
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0
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4.5k
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Comment: C: How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
6.7 years ago by Fidel ★ 2.0k
2
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1
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4.5k
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Answer: A: How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
6.7 years ago by Fidel ★ 2.0k
1
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1
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4.5k
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Comment: C: How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
6.7 years ago by Fidel ★ 2.0k
0
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1
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4.5k
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Comment: C: How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
6.7 years ago by Fidel ★ 2.0k
0
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1
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4.5k
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Comment: C: How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
6.7 years ago by Fidel ★ 2.0k
0
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1
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4.5k
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Comment: C: How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
6.7 years ago by Fidel ★ 2.0k
6
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1
reply
5.9k
views
Answer: A: Do specialized Hi-C databases exist?
6.7 years ago by Fidel ★ 2.0k
2
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0
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7.1k
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Answer: A: TUTORIALS about Hi-C data analysis
6.7 years ago by Fidel ★ 2.0k
8
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12
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4.5k
views
How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
bwa enzyme
6.7 years ago by Fidel ★ 2.0k
3
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0
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7.2k
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Answer: A: ChIP-Seq TSS Line Plot
6.9 years ago by Fidel ★ 2.0k
0
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0
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1.4k
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Comment: C: Hi-C resolution and bin count > 0 for ICE correction
7.3 years ago by Fidel ★ 2.0k
2
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1
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1.9k
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Answer: A: Finding histone modification enrichment specific loci using modENCODE data
7.3 years ago by Fidel ★ 2.0k
0
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0
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2.2k
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Comment: C: How to separate chip-seq peaks which are enriched for known TFs motifs from give
7.4 years ago by Fidel ★ 2.0k
2
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1
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2.2k
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Comment: C: Pysam: Determine intra-read-position of Base at Pileupsite
7.4 years ago by Fidel ★ 2.0k
0
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0
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3.1k
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Comment: C: Annotate each peak to gene starts within 10 kb of the peak with python ?
7.4 years ago by Fidel ★ 2.0k
0
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0
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3.7k
views
Comment: C: IGV resizing tracks
7.4 years ago by Fidel ★ 2.0k
1
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0
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2.0k
views
Answer: A: Error for read density visualization
7.4 years ago by Fidel ★ 2.0k
2
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0
replies
4.2k
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Comment: C: Open-source tools for GO enrichment in non-model organisms
7.4 years ago by Fidel ★ 2.0k
5
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3
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46k
views
Comment: C: Visualization of ChIP-seq data using Heatmaps (Updated: 03/10/16)
7.4 years ago by Fidel ★ 2.0k
0
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0
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6.0k
views
Comment: C: Chip-Seq Peak hight difference between BED and BW file formats.
7.5 years ago by Fidel ★ 2.0k
3
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0
replies
2.4k
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Answer: A: Paired-end data with different length
7.5 years ago by Fidel ★ 2.0k
1
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0
replies
2.2k
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Comment: C: Separating gene list into chromatin domains and analysing separately within each
7.5 years ago by Fidel ★ 2.0k
4
votes
1
reply
46k
views
Comment: C: Visualization of ChIP-seq data using Heatmaps (Updated: 03/10/16)
7.5 years ago by Fidel ★ 2.0k
159 results • Page 1 of 4
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