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Answer: A: pipeline of analyses to identify functional loops of chromosomes
updated 4.4 years ago by 43k • written 8.4 years ago by ★ 2.0k
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Answer: A: Finding instances of motifs near peaks
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 2.0k
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1
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3.5k
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Answer: A: the "major" problem of gene identifiers conversion
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 2.0k
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4.2k
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Answer: A: count the number of transcription factor binding sites
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 2.0k
6
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Answer: A: what is the meaning of "degenerative nature" of Chip-seq
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 2.0k
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Answer: A: Associate peak score to gene
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 2.0k
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Answer: A: Analysis Big Data from Hi-C--> a way to find significant interaction ?
updated 4.4 years ago by 43k • written 8.8 years ago by ★ 2.0k
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Answer: A: How do I compute the effective genome size?
updated 4.4 years ago by 43k • written 8.6 years ago by ★ 2.0k
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Answer: A: ChIP-Seq alignment with random site for duplicated
updated 4.5 years ago by 43k • written 8.8 years ago by ★ 2.0k
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Answer: A: mapping PE or SE?
updated 4.5 years ago by 43k • written 8.9 years ago by ★ 2.0k
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3.8k
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Answer: A: Functional Classification Of Protein Complexes
updated 4.6 years ago by 43k • written 12.2 years ago by ★ 2.0k
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Answer: A: Single Cell RNA Seq. Analysis
updated 5.0 years ago by 43k • written 5.0 years ago by ★ 2.0k
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5.9k
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Answer: A: Cannot read loom file in scanpy
5.0 years ago by Fidel ★ 2.0k
3
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5.0k
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Answer: A: How quantitative is Chip-seq?
updated 6.5 years ago by 104k • written 7.9 years ago by ★ 2.0k
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1
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4.9k
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Answer: A: How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
7.3 years ago by Fidel ★ 2.0k
6
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6.2k
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Answer: A: Do specialized Hi-C databases exist?
7.3 years ago by Fidel ★ 2.0k
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7.5k
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Answer: A: TUTORIALS about Hi-C data analysis
7.3 years ago by Fidel ★ 2.0k
3
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7.9k
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Answer: A: ChIP-Seq TSS Line Plot
7.4 years ago by Fidel ★ 2.0k
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2.1k
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Answer: A: Finding histone modification enrichment specific loci using modENCODE data
7.9 years ago by Fidel ★ 2.0k
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Answer: A: Error for read density visualization
8.0 years ago by Fidel ★ 2.0k
3
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Answer: A: Paired-end data with different length
8.1 years ago by Fidel ★ 2.0k
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1
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4.7k
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Answer: Answer: Python multiprocessing FASTQ file
updated 21 months ago by 43k • written 8.2 years ago by ★ 2.0k
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1
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3.0k
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Answer: Answer: Discovering motifs for core promoter elements on a set of enhancer sites
updated 21 months ago by 43k • written 8.2 years ago by ★ 2.0k
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Answer: Answer: Individual colors for heatmaps using ngsplot
updated 21 months ago by 43k • written 8.2 years ago by ★ 2.0k
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2.4k
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Answer: A: Comparison of two MeDip data sets
8.2 years ago by Fidel ★ 2.0k
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2.8k
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Answer: A: Generating a strand specific heatmap of ChIP-Seq Data
8.3 years ago by Fidel ★ 2.0k
2
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1
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2.5k
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Answer: Answer: Re-creating a published figure
updated 20 months ago by 43k • written 8.4 years ago by ★ 2.0k
2
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0
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7.9k
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Answer: Answer: Deeptools sample scaling
updated 20 months ago by 43k • written 8.4 years ago by ★ 2.0k
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2
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4.7k
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Answer: Answer: NGS plot error
updated 20 months ago by 43k • written 8.5 years ago by ★ 2.0k
2
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0
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8.5k
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Answer: Answer: How To Convert A Basic Bed File With Only 3 Columns (Chrname, Start, End Site) I
updated 19 months ago by 43k • written 8.5 years ago by ★ 2.0k
2
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0
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2.9k
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Answer: Answer: H3K4me3 occupancy visualisation
updated 19 months ago by 43k • written 8.6 years ago by ★ 2.0k
2
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1
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6.1k
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Answer: Answer: Making TSS plots for some genes for a particular histone mark
updated 18 months ago by 43k • written 8.7 years ago by ★ 2.0k
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2
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2.5k
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Answer: Answer: analysis of deletion/insertion from mitochondria NGS data
updated 18 months ago by 43k • written 8.7 years ago by ★ 2.0k
4
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1
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2.6k
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Answer: Answer: How to convert between gene ontology file formats
updated 18 months ago by 43k • written 8.7 years ago by ★ 2.0k
0
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1
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4.2k
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Answer: Answer: Normalization of DNase-seq samples with globally different chromatin structures
updated 17 months ago by 43k • written 8.7 years ago by ★ 2.0k
5
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0
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2.2k
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Answer: Answer: Different qualities of genomes - Is there a standard/definition?
updated 17 months ago by 43k • written 8.7 years ago by ★ 2.0k
1
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1
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3.2k
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Answer: Answer: How to test statistical significance of ChIPseq enrichment in custom BED regions
updated 17 months ago by 43k • written 8.7 years ago by ★ 2.0k
1
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1
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1.7k
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Answer: Answer: QC of ChIPseq data (controlling false negatives)
updated 17 months ago by 43k • written 8.8 years ago by ★ 2.0k
1
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0
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2.6k
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Answer: Answer: How to check whether two genomic regions contact in 3D?
updated 23 months ago by 43k • written 9.1 years ago by ★ 2.0k
1
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1
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7.5k
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Answer: Answer: How to compute physical per-base coverage from WGS paired-end reads?
updated 24 months ago by 43k • written 9.2 years ago by ★ 2.0k
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1
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1.8k
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Answer: Answer: What are the steps to follow to extract a promoter region starting from illumina
updated 24 months ago by 43k • written 9.2 years ago by ★ 2.0k
2
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1
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4.3k
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Answer: Answer: Application of Hi-C
updated 24 months ago by 43k • written 9.2 years ago by ★ 2.0k
8
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1
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10k
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Answer: Answer: Normalising ChIP-seq data to RPM using a 1 or 2 count for paired-end data?
updated 2.0 years ago by 43k • written 9.2 years ago by ★ 2.0k
1
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1
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3.9k
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Answer: Answer: Scan a large genome for the ocurrence of a single sequence motif?
updated 2.0 years ago by 43k • written 9.2 years ago by ★ 2.0k
0
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1
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9.7k
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Answer: Answer: How do I view the height / distribution of ChIP-seq peaks?
updated 2.0 years ago by 43k • written 9.2 years ago by ★ 2.0k
4
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1
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16k
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Answer: A: Best Way To Get Truly Unique Reads In Bowtie/Sam?
updated 10.0 years ago by 11k • written 11.4 years ago by ★ 2.0k
2
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0
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3.4k
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Answer: A: Count The Coverage Rate Of A Bacterial Genome'S Bam File
10.1 years ago by Fidel ★ 2.0k
7
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0
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12k
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Answer: A: How To Plot Read Coverage Over Many Different Genomic Regions?
10.1 years ago by Fidel ★ 2.0k
1
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0
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11k
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Answer: A: Emule "Samtools View" Using Pysam
10.2 years ago by Fidel ★ 2.0k
5
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1
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13k
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Answer: A: Chipseq Wig File With The Input Subtracted From Chip Sample
10.4 years ago by Fidel ★ 2.0k
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