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1
vote
0
replies
5.5k
views
Comment:
C: Error when using Bedtools fisher on sorted bed files
updated 4.9 years ago by
Ram
44k • written 8.8 years ago by
Fidel
★ 2.0k
1
vote
0
replies
12k
views
Comment:
C: Meaning of Chromatin state
updated 4.9 years ago by
Ram
44k • written 8.8 years ago by
Fidel
★ 2.0k
7
votes
11
replies
9.1k
views
7 follow
how to merge overlapping intervals in a bedgraph file
sequence
bedtools
updated 2.3 years ago by
Ram
44k • written 9.1 years ago by
Fidel
★ 2.0k
0
votes
0
replies
9.8k
views
Comment:
C: HOMER find motifs from BED data
updated 5.0 years ago by
Ram
44k • written 8.8 years ago by
Fidel
★ 2.0k
0
votes
0
replies
3.0k
views
Comment:
C: Chipseq overlap of peaks
updated 5.0 years ago by
Ram
44k • written 9.1 years ago by
Fidel
★ 2.0k
0
votes
0
replies
2.0k
views
Answer:
A: pipeline of analyses to identify functional loops of chromosomes
updated 5.0 years ago by
Ram
44k • written 9.1 years ago by
Fidel
★ 2.0k
0
votes
0
replies
3.1k
views
Answer:
A: Finding instances of motifs near peaks
updated 5.0 years ago by
Ram
44k • written 9.1 years ago by
Fidel
★ 2.0k
0
votes
0
replies
4.1k
views
Comment:
C: the "major" problem of gene identifiers conversion
updated 5.0 years ago by
Ram
44k • written 9.1 years ago by
Fidel
★ 2.0k
2
votes
1
reply
4.1k
views
Answer:
A: the "major" problem of gene identifiers conversion
updated 5.0 years ago by
Ram
44k • written 9.1 years ago by
Fidel
★ 2.0k
0
votes
0
replies
9.1k
views
Comment:
C: how to merge overlapping intervals in a bedgraph file
updated 5.0 years ago by
Ram
44k • written 9.1 years ago by
Fidel
★ 2.0k
0
votes
0
replies
6.6k
views
Comment:
C: DNA binding site motif database
updated 5.0 years ago by
Ram
44k • written 9.1 years ago by
Fidel
★ 2.0k
0
votes
1
reply
4.5k
views
Answer:
A: count the number of transcription factor binding sites
updated 5.0 years ago by
Ram
44k • written 9.1 years ago by
Fidel
★ 2.0k
0
votes
1
reply
3.6k
views
Comment:
C: Associate peak score to gene
updated 5.0 years ago by
Ram
44k • written 9.1 years ago by
Fidel
★ 2.0k
6
votes
0
replies
2.1k
views
Answer:
A: what is the meaning of "degenerative nature" of Chip-seq
updated 5.1 years ago by
Ram
44k • written 9.2 years ago by
Fidel
★ 2.0k
1
vote
1
reply
3.6k
views
Answer:
A: Associate peak score to gene
updated 5.1 years ago by
Ram
44k • written 9.2 years ago by
Fidel
★ 2.0k
3
votes
2
replies
4.2k
views
Answer:
A: Analysis Big Data from Hi-C--> a way to find significant interaction ?
updated 5.1 years ago by
Ram
44k • written 9.4 years ago by
Fidel
★ 2.0k
1
vote
0
replies
9.8k
views
Answer:
A: How do I compute the effective genome size?
updated 5.1 years ago by
Ram
44k • written 9.2 years ago by
Fidel
★ 2.0k
0
votes
1
reply
6.7k
views
Comment:
C: Making TSS plots for some genes for a particular histone mark
updated 5.1 years ago by
Ram
44k • written 9.3 years ago by
Fidel
★ 2.0k
0
votes
0
replies
2.2k
views
Answer:
A: ChIP-Seq alignment with random site for duplicated
updated 5.1 years ago by
Ram
44k • written 9.4 years ago by
Fidel
★ 2.0k
0
votes
0
replies
2.4k
views
Answer:
A: mapping PE or SE?
updated 5.1 years ago by
Ram
44k • written 9.5 years ago by
Fidel
★ 2.0k
1
vote
0
replies
39k
views
Comment:
C: Efficient And Fastest Way To Sort Large (>100Gb) Bam Files?
updated 5.2 years ago by
Ram
44k • written 12.5 years ago by
Fidel
★ 2.0k
1
vote
0
replies
4.0k
views
Answer:
A: Functional Classification Of Protein Complexes
updated 5.2 years ago by
Ram
44k • written 12.8 years ago by
Fidel
★ 2.0k
4
votes
0
replies
6.2k
views
Answer:
A: Single Cell RNA Seq. Analysis
updated 5.6 years ago by
Ram
44k • written 5.7 years ago by
Fidel
★ 2.0k
0
votes
1
reply
6.4k
views
Answer:
A: Cannot read loom file in scanpy
5.7 years ago by
Fidel
★ 2.0k
3
votes
1
reply
5.4k
views
Answer:
A: How quantitative is Chip-seq?
updated 7.2 years ago by
Devon Ryan
104k • written 8.6 years ago by
Fidel
★ 2.0k
0
votes
0
replies
2.9k
views
Comment:
C: TAD calling with HiCExplorer - TypeError in hicFindTADs TAD_score
7.2 years ago by
Fidel
★ 2.0k
1
vote
0
replies
2.9k
views
Comment:
C: TAD calling with HiCExplorer - TypeError in hicFindTADs TAD_score
7.3 years ago by
Fidel
★ 2.0k
1
vote
0
replies
5.2k
views
Comment:
C: How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
7.9 years ago by
Fidel
★ 2.0k
2
votes
1
reply
5.2k
views
Answer:
A: How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
7.9 years ago by
Fidel
★ 2.0k
1
vote
1
reply
5.2k
views
Comment:
C: How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
7.9 years ago by
Fidel
★ 2.0k
0
votes
1
reply
5.2k
views
Comment:
C: How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
7.9 years ago by
Fidel
★ 2.0k
0
votes
1
reply
5.2k
views
Comment:
C: How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
7.9 years ago by
Fidel
★ 2.0k
0
votes
1
reply
5.2k
views
Comment:
C: How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
7.9 years ago by
Fidel
★ 2.0k
6
votes
1
reply
6.6k
views
Answer:
A: Do specialized Hi-C databases exist?
7.9 years ago by
Fidel
★ 2.0k
2
votes
0
replies
7.8k
views
Answer:
A: TUTORIALS about Hi-C data analysis
7.9 years ago by
Fidel
★ 2.0k
8
votes
12
replies
5.2k
views
How To Use Bwa To Find Restriction Enzyme Coordinates In A Genome
bwa
enzyme
7.9 years ago by
Fidel
★ 2.0k
3
votes
0
replies
8.7k
views
Answer:
A: ChIP-Seq TSS Line Plot
8.0 years ago by
Fidel
★ 2.0k
0
votes
0
replies
1.6k
views
Comment:
C: Hi-C resolution and bin count > 0 for ICE correction
8.5 years ago by
Fidel
★ 2.0k
2
votes
1
reply
2.2k
views
Answer:
A: Finding histone modification enrichment specific loci using modENCODE data
8.5 years ago by
Fidel
★ 2.0k
0
votes
0
replies
2.6k
views
Comment:
C: How to separate chip-seq peaks which are enriched for known TFs motifs from give
8.6 years ago by
Fidel
★ 2.0k
2
votes
1
reply
2.6k
views
Comment:
C: Pysam: Determine intra-read-position of Base at Pileupsite
8.6 years ago by
Fidel
★ 2.0k
0
votes
0
replies
3.6k
views
Comment:
C: Annotate each peak to gene starts within 10 kb of the peak with python ?
8.6 years ago by
Fidel
★ 2.0k
0
votes
0
replies
4.5k
views
Comment:
C: IGV resizing tracks
8.6 years ago by
Fidel
★ 2.0k
1
vote
0
replies
2.2k
views
Answer:
A: Error for read density visualization
8.6 years ago by
Fidel
★ 2.0k
2
votes
0
replies
4.7k
views
Comment:
C: Open-source tools for GO enrichment in non-model organisms
8.6 years ago by
Fidel
★ 2.0k
5
votes
3
replies
53k
views
Comment:
C: Visualization of ChIP-seq data using Heatmaps (Updated: 03/10/16)
8.6 years ago by
Fidel
★ 2.0k
0
votes
0
replies
7.0k
views
Comment:
C: Chip-Seq Peak hight difference between BED and BW file formats.
8.7 years ago by
Fidel
★ 2.0k
3
votes
0
replies
2.7k
views
Answer:
A: Paired-end data with different length
8.7 years ago by
Fidel
★ 2.0k
1
vote
0
replies
2.6k
views
Comment:
C: Separating gene list into chromatin domains and analysing separately within each
8.7 years ago by
Fidel
★ 2.0k
4
votes
1
reply
53k
views
Comment:
C: Visualization of ChIP-seq data using Heatmaps (Updated: 03/10/16)
8.7 years ago by
Fidel
★ 2.0k
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