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1
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2
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miRDeep2: mapping produced bowtie.log and mapper.log - which one to trust?
miRDeep2 miRNA-Seq small RNA-Seq RNA-Seq
updated 9 months ago by • 0 • written 6.1 years ago by ★ 2.4k
292
votes
27
replies
41k
views
33 follow
Forum: Up-to-date RNA-Seq Analysis Training/Courses/Papers (Dec 2017)
RNA-Seq sequencing papers
updated 6 months ago by 37k • written 7.0 years ago by ★ 2.4k
0
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0
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3.9k
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Comment: C: cellranger mkref failed
2.8 years ago by CandiceChuDVM ★ 2.4k
0
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1
reply
3.9k
views
Comment: C: cellranger mkref failed
2.8 years ago by CandiceChuDVM ★ 2.4k
0
votes
0
replies
41k
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Comment: C: Up-to-date Online RNA Sequence Analysis Training/Courses/Papers?
updated 3.1 years ago by 37k • written 7.0 years ago by ★ 2.4k
10
votes
9
replies
2.9k
views
Small RNA-seq experimental design, pooling samples or not ? which one is better?
RNA-Seq mirna-seq microrna small RNA-SEQ pooling
updated 4.7 years ago by ▴ 10 • written 5.8 years ago by ★ 2.4k
12
votes
11
replies
6.5k
views
Tutorial: How to upload your RNA-Seq data to NCBI Sequence Read Archive (SRA)
NCBI SRA Bioproject BioSample Tutorial
updated 5.6 years ago by ▴ 20 • written 5.9 years ago by ★ 2.4k
16
votes
10
replies
3.8k
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How to perform edgeR based on serial paired samples? (model.matrix design)
edgeR r RNA-Seq
5.6 years ago by CandiceChuDVM ★ 2.4k
1
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2
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3.8k
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Comment: C: How to perform edgeR based on serial paired samples?
5.6 years ago by CandiceChuDVM ★ 2.4k
0
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0
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2.9k
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Answer: A: Small RNA-seq experimental design, pooling samples or not ? which one is better?
5.8 years ago by CandiceChuDVM ★ 2.4k
0
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0
replies
2.9k
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Comment: C: Small RNA-seq experimental design, which one is better?
5.8 years ago by CandiceChuDVM ★ 2.4k
0
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1
reply
6.5k
views
Comment: C: How to upload your RNA-Seq data to NCBI Sequence Read Archive (SRA)
5.9 years ago by CandiceChuDVM ★ 2.4k
0
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0
replies
6.5k
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Comment: C: How to upload your RNA-Seq data to NCBI Sequence Read Archive (SRA)
5.9 years ago by CandiceChuDVM ★ 2.4k
0
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0
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6.5k
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Comment: C: How to upload your RNA-Seq data to NCBI Sequence Read Archive (SRA)
5.9 years ago by CandiceChuDVM ★ 2.4k
1
vote
0
replies
3.3k
views
NCBI SRA submission: neither sample_name nor biosample_accession are set
SRA Sequence Read Archive ncbi RNA-Seq
5.9 years ago by CandiceChuDVM ★ 2.4k
1
vote
0
replies
41k
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Comment: C: Up-to-date RNA-Seq Analysis Training/Courses/Papers (July 2016)
6.5 years ago by CandiceChuDVM ★ 2.4k
1
vote
3
replies
2.4k
views
How to interpret RseQC result for -r/--mate-inner-dist in Tophat2?
Tophat2 bowtie2 RseQC RNA-Seq
updated 6.6 years ago by 20 • written 6.9 years ago by ★ 2.4k
0
votes
5
replies
1.7k
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Possible downsides for direct gene list analysis in Gene Ontology?
RNA-Seq gene ontology goseq R panther
updated 6.7 years ago by 20 • written 6.7 years ago by ★ 2.4k
0
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1
reply
3.6k
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Comment: C: How to do gene length bias corrected KEGG pathway analysis for non-native specie
6.7 years ago by CandiceChuDVM ★ 2.4k
1
vote
3
replies
3.6k
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How to do gene length bias corrected KEGG pathway analysis for non-native species in goseq?
goseq biomaRt R RNA-Seq gene ontology
updated 6.7 years ago by ▴ 90 • written 6.7 years ago by ★ 2.4k
0
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1
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1.7k
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Comment: C: Possible downsides for direct gene list analysis in Gene Ontology?
6.7 years ago by CandiceChuDVM ★ 2.4k
0
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0
replies
1.7k
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Comment: C: Possible downsides for direct gene list analysis in Gene Ontology?
6.7 years ago by CandiceChuDVM ★ 2.4k
0
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0
replies
2.6k
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Comment: C: Inconsistency in Panther vs KOBAS2.0. Other recommendation for KEGG?
6.7 years ago by CandiceChuDVM ★ 2.4k
6
votes
13
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2.6k
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Inconsistency in Panther vs KOBAS2.0. Other recommendation for KEGG?
RNA-Seq GENE ONTOLOGY GO KEGG
6.7 years ago by CandiceChuDVM ★ 2.4k
0
votes
1
reply
2.6k
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Comment: C: Inconsistency in Panther vs KOBAS2.0. Other recommendation for KEGG?
6.7 years ago by CandiceChuDVM ★ 2.4k
0
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1
reply
2.6k
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Answer: A: Gene Ontology: Panther or KEGG?
6.7 years ago by CandiceChuDVM ★ 2.4k
0
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0
replies
2.6k
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Answer: A: Gene Ontology: Panther or KEGG?
6.8 years ago by CandiceChuDVM ★ 2.4k
0
votes
1
reply
4.8k
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Comment: C: DESeq2 time course experiments: how to make plots for selected genes?
6.8 years ago by CandiceChuDVM ★ 2.4k
4
votes
3
replies
4.8k
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DESeq2 time course experiments: how to make plots for specific genes?
RNA-Seq deseq2 r
6.8 years ago by CandiceChuDVM ★ 2.4k
5
votes
12
replies
3.1k
views
Low DE genes in DESeq2 (update PCA plots)
RNA-Seq HTseq HISAT2 DEseq2 Samtools
6.8 years ago by CandiceChuDVM ★ 2.4k
0
votes
1
reply
3.1k
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Comment: C: Low DE genes in DESeq2
6.8 years ago by CandiceChuDVM ★ 2.4k
0
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1
reply
3.1k
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Comment: C: Low DE genes in DESeq2
6.8 years ago by CandiceChuDVM ★ 2.4k
0
votes
1
reply
3.1k
views
Comment: C: Low DE genes in DESeq2
6.8 years ago by CandiceChuDVM ★ 2.4k
0
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0
replies
3.1k
views
Comment: C: Low DE genes in DESeq2
6.8 years ago by CandiceChuDVM ★ 2.4k
0
votes
1
reply
3.1k
views
Comment: C: Low DE genes in DESeq2
6.8 years ago by CandiceChuDVM ★ 2.4k
0
votes
0
replies
2.2k
views
Can't group samples in StringTie for differential expression
RNA-Seq StringTie differential expression
6.8 years ago by CandiceChuDVM ★ 2.4k
0
votes
0
replies
18k
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Comment: C: HISAT2 command help
6.8 years ago by CandiceChuDVM ★ 2.4k
0
votes
1
reply
18k
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Comment: C: HISAT2 command help
6.8 years ago by CandiceChuDVM ★ 2.4k
0
votes
1
reply
2.1k
views
Cuffdiff output ID list for gene ontology analysis in Panther
RNA-Seq Panther Gene Ontology cuffdiff
6.8 years ago by CandiceChuDVM ★ 2.4k
0
votes
0
replies
2.1k
views
Answer: A: Cuffdiff output ID list for gene ontology analysis in Panther
6.8 years ago by CandiceChuDVM ★ 2.4k
1
vote
3
replies
2.1k
views
CummeRbund: unable to use getGenes to retrieve short names in R
RNA-Seq cummeRbund R
updated 6.8 years ago by 11k • written 6.8 years ago by ★ 2.4k
0
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0
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2.1k
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Comment: C: CummeRbund: unable to use getGenes to retrieve short names in R
6.8 years ago by CandiceChuDVM ★ 2.4k
0
votes
0
replies
5.8k
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Comment: C: Tophat - Understated Number Of Reads In The "Align_Summary.Txt" File
6.8 years ago by CandiceChuDVM ★ 2.4k
1
vote
1
reply
3.9k
views
Answer: A: RNA-Seq for DE analysis
6.8 years ago by CandiceChuDVM ★ 2.4k
0
votes
1
reply
7.4k
views
Answer: A: Downloading the UCSC gene annotation files
6.8 years ago by CandiceChuDVM ★ 2.4k
0
votes
1
reply
2.4k
views
Answer: A: Bowtie2 "test run" to find out the value for -r/--mate-inner-dist in Tophat2
6.9 years ago by CandiceChuDVM ★ 2.4k
3
votes
3
replies
1.7k
views
Is dog (Canis familiaris) transcriptome considered well-annotated?
RNA-Seq alignment annotation
updated 6.9 years ago by ▴ 790 • written 6.9 years ago by ★ 2.4k
0
votes
0
replies
1.7k
views
Comment: A: Is dog (Canis familiaris) transcriptome considered well-annotated?
6.9 years ago by CandiceChuDVM ★ 2.4k
0
votes
0
replies
41k
views
Comment: C: Up-to-date RNA Sequence Analysis Training/Courses/Papers?
6.9 years ago by CandiceChuDVM ★ 2.4k
2
votes
0
replies
41k
views
Comment: C: Up-to-date Online RNA Sequence Analysis Training/Courses/Papers?
7.0 years ago by CandiceChuDVM ★ 2.4k
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