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1.6k
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Comment: Comment: Snakemake config errors
9 months ago by Eric Lim ★ 2.2k
1
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0
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1.1k
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Answer: Answer: Output checks during Snakemake pipeline
14 months ago by Eric Lim ★ 2.2k
0
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0
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589
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Comment: Comment: usually retained introns
14 months ago by Eric Lim ★ 2.2k
0
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0
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997
views
Comment: Comment: Snakemake paralellize
21 months ago by Eric Lim ★ 2.2k
1
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1
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1.4k
views
Comment: Comment: Suggestions for a simpler solution for collecting snakemake rule output in a tex
21 months ago by Eric Lim ★ 2.2k
1
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1
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2.9k
views
Comment: Comment: Snakemake issue with wrappers
2.0 years ago by Eric Lim ★ 2.2k
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0
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2.4k
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Comment: Comment: Wildcards in Snakemake
2.1 years ago by Eric Lim ★ 2.2k
0
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1
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2.4k
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Comment: Comment: Wildcards in Snakemake
2.1 years ago by Eric Lim ★ 2.2k
1
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0
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5.5k
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Answer: Answer: Don't choose Novogene for your sequencing projects
2.3 years ago by Eric Lim ★ 2.2k
1
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0
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1.8k
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Comment: Comment: Identify Alternative Splicing Event using exon and junction count table
2.3 years ago by Eric Lim ★ 2.2k
0
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1
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1.7k
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Comment: Comment: take user options before calling snakemake
2.6 years ago by Eric Lim ★ 2.2k
0
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1
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1.7k
views
Comment: Comment: Do we need replicates for PSI calculation in SUPPA2?
2.6 years ago by Eric Lim ★ 2.2k
2
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1
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2.8k
views
Comment: Comment: how to speed up snakemake workflow
2.9 years ago by Eric Lim ★ 2.2k
1
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1
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2.6k
views
Answer: Answer: how to specify a specific conda environment in a specific rule with snakemake?
3.0 years ago by Eric Lim ★ 2.2k
1
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0
replies
1.2k
views
Comment: Comment: Rule all has wrong order
3.1 years ago by Eric Lim ★ 2.2k
1
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0
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5.3k
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Comment: Comment: Prepare for a job interview in bioinformatics
3.2 years ago by Eric Lim ★ 2.2k
1
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1
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4.0k
views
Comment: Comment: Big difference in estimated duplicate reads between forward and reverse of paire
3.4 years ago by Eric Lim ★ 2.2k
0
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0
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1.5k
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Job: Bioinformatics Lead at Stoke Therapeutics, Inc (MA)
rna-splicing
updated 3.4 years ago by 45k • written 3.6 years ago by ★ 2.2k
0
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1
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2.6k
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Comment: Comment: Understanding percent spliced in
3.7 years ago by Eric Lim ★ 2.2k
0
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1
reply
1.9k
views
Comment: Comment: Snakemake error in gatk pipeline
3.8 years ago by Eric Lim ★ 2.2k
1
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0
replies
6.9k
views
Comment: Comment: Read bam/cram file with IGV from aws s3
3.8 years ago by Eric Lim ★ 2.2k
3
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1
reply
6.4k
views
Answer: Answer: Is it possible to pass command line arguments to python script in snakemake?
3.8 years ago by Eric Lim ★ 2.2k
1
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0
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933
views
Comment: Comment: What happens to the outputs when you update the rule's conda environment
3.8 years ago by Eric Lim ★ 2.2k
3
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1
reply
2.2k
views
Comment: Comment: Snakemake issue
3.8 years ago by Eric Lim ★ 2.2k
0
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0
replies
3.7k
views
Answer: Answer: Snakemake command line arguments
3.8 years ago by Eric Lim ★ 2.2k
1
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1
reply
3.3k
views
Comment: Comment: snakemake how to get or create wildcards from newly generated files
3.8 years ago by Eric Lim ★ 2.2k
1
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0
replies
3.3k
views
Comment: Comment: Anyone know any clever snakemake/SLURM tricks to run a big analysis with limited
3.9 years ago by Eric Lim ★ 2.2k
1
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1
reply
3.3k
views
Comment: Comment: Anyone know any clever snakemake/SLURM tricks to run a big analysis with limited
3.9 years ago by Eric Lim ★ 2.2k
2
votes
1
reply
3.3k
views
Answer: Answer: Anyone know any clever snakemake/SLURM tricks to run a big analysis with limited
3.9 years ago by Eric Lim ★ 2.2k
0
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2
replies
4.7k
views
Comment: Comment: Snakemake Megahit error
4.0 years ago by Eric Lim ★ 2.2k
0
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1
reply
4.7k
views
Comment: Comment: Snakemake Megahit error
4.0 years ago by Eric Lim ★ 2.2k
1
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0
replies
3.2k
views
Comment: Comment: Missing Input files Error with snakemake pipeline
4.0 years ago by Eric Lim ★ 2.2k
1
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1
reply
3.2k
views
Comment: Comment: Missing Input files Error with snakemake pipeline
4.0 years ago by Eric Lim ★ 2.2k
2
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1
reply
3.2k
views
Answer: Answer: Missing Input files Error with snakemake pipeline
4.0 years ago by Eric Lim ★ 2.2k
1
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0
replies
4.7k
views
Comment: Comment: Snakemake Megahit error
4.0 years ago by Eric Lim ★ 2.2k
0
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0
replies
1.0k
views
Comment: Comment: snakemake input wildcards
4.0 years ago by Eric Lim ★ 2.2k
2
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1
reply
5.3k
views
Comment: Comment: Biopython SeqIO: AttributeError: 'str' object has no attribute 'id'
4.3 years ago by Eric Lim ★ 2.2k
0
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0
replies
1.3k
views
Job: Bioinformatics internships and co-ops (2021) at Stoke Therapeutics. Remote locations in the US.
internship co-op
updated 2.6 years ago by 45k • written 4.7 years ago by ★ 2.2k
0
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0
replies
3.1k
views
Comment: C: Bioinformatics Server on AWS
5.7 years ago by Eric Lim ★ 2.2k
4
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1
reply
4.9k
views
Answer: A: Snakemake: Force execution of rules in a specific order - ignoring wildcards
5.7 years ago by Eric Lim ★ 2.2k
1
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1
reply
2.7k
views
Comment: C: GSK Data Strategy & Design Expert
5.8 years ago by Eric Lim ★ 2.2k
8
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9
replies
4.0k
views
6 follow
Big difference in estimated duplicate reads between forward and reverse of paired-end RNA-seq
RNA-Seq duplication fastqc
updated 3.4 years ago by ▴ 940 • written 6.0 years ago by ★ 2.2k
0
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0
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1.4k
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Comment: C: Generate list of numbers corresponding to fq reads based on 6-character barcode
6.0 years ago by Eric Lim ★ 2.2k
1
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0
replies
3.3k
views
Comment: C: how to index different genomes with snakemake with different parameters?
6.0 years ago by Eric Lim ★ 2.2k
0
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0
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2.0k
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Comment: C: LiftOver from b37
6.0 years ago by Eric Lim ★ 2.2k
0
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0
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1.9k
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Comment: C: Understanding the annotation tag
6.0 years ago by Eric Lim ★ 2.2k
2
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0
replies
1.4k
views
Answer: C: Identifying codons from rna-seq data (bed/bam file)
6.0 years ago by Eric Lim ★ 2.2k
1
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1
reply
4.0k
views
Comment: C: Big difference in estimated duplicate reads between forward and reverse of paire
6.0 years ago by Eric Lim ★ 2.2k
0
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1
reply
4.0k
views
Comment: C: Big difference in estimated duplicate reads between forward and reverse of paire
6.0 years ago by Eric Lim ★ 2.2k
0
votes
0
replies
2.4k
views
Job: Bioinformatics Analyst - Stoke Therapeutics, Inc, Bedford MA, USA
aws web-application ngs
updated 2.4 years ago by 45k • written 6.0 years ago by ★ 2.2k
234 results • Page 1 of 5
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