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2.6k
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Comment: Comment: dN/dS in a tree (multiple genes)
3 months ago by BlastedBadger ▴ 140
4
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2
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2.6k
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dN/dS in a tree (multiple genes)
dN/dS dNdS KaKs Phylogenetics PAML
3 months ago by BlastedBadger ▴ 140
0
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1
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335
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Comment: Comment: How can we Convert .smp files to .hmm files ?
8 months ago by BlastedBadger ▴ 140
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0
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308
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Answer: Answer: Group rows in table based on column
8 months ago by BlastedBadger ▴ 140
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0
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338
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Comment: Comment: Conserved domains in multiple sequence alignment
9 months ago by BlastedBadger ▴ 140
0
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0
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227
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Different ESS estimates of Tracer VS tracecomp
mcmc ess tracer phylobayes bayesian
8 months ago by BlastedBadger ▴ 140
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0
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482
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Answer: Answer: Simulation of dna sequences through substitution rates
14 months ago by BlastedBadger ▴ 140
2
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3
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569
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Tool to visualize alignment comparisons / Alignment diff
alignment visualization diff
updated 14 months ago by ★ 1.7k • written 14 months ago by ▴ 140
2
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0
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754
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Comment: Comment: t-SNE analysis on multiple fasta files in R
14 months ago by BlastedBadger ▴ 140
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0
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641
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Answer: Answer: Alignment of protein sequence to Pfam seed alignment
14 months ago by BlastedBadger ▴ 140
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1
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600
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Answer: Answer: Simulation - Evolution of the number of genes
14 months ago by BlastedBadger ▴ 140
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0
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358
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Input alignment for Beast as an external *link* in the XML control file.
Beast Beast2 beastGen Beauti
2.2 years ago by BlastedBadger ▴ 140
3
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2
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2.1k
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Where has the R Ape 'chronogram' function gone (Non-Parametric Rate Smoothing)?
R ape chronogram NPRS Phylogenetic dating
updated 3.3 years ago by 20 • written 5.8 years ago by ▴ 140
2
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0
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578
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Answer: A: Syntax highlighting for PAML's control files in Vim
3.3 years ago by BlastedBadger ▴ 140
2
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1
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578
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Syntax highlighting for PAML's control files in Vim
PAML Vim
3.3 years ago by BlastedBadger ▴ 140
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0
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6.9k
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Answer: A: Convert Nexus format to Newick format
3.6 years ago by BlastedBadger ▴ 140
2
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0
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807
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Why is an hclust plot not ultrametric with "average" agglomeration method?
hierarchical clustering R
4.1 years ago by BlastedBadger ▴ 140
1
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1
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729
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Comment: C: Stratify phylogeny based on variables - e.g. which ST are represented by high %
4.2 years ago by BlastedBadger ▴ 140
0
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0
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729
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Comment: C: Stratify phylogeny based on variables - e.g. which ST are represented by high %
4.2 years ago by BlastedBadger ▴ 140
0
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0
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1.4k
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Comment: C: Extract species tree from the Ensembl Compara database
4.2 years ago by BlastedBadger ▴ 140
1
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3
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1.4k
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Extract species tree from the Ensembl Compara database
tree EnsEMBL database
updated 4.2 years ago by 23k • written 4.2 years ago by ▴ 140
2
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2
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3.5k
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Get dS numbers _per branch_ with PAML codeml (or branch length estimates)
PAML codeml dS substitution rates phylogeny
updated 5.0 years ago by ▴ 200 • written 6.4 years ago by ▴ 140
0
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0
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3.6k
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Comment: C: Convert SNP dataset from PACKEDANCESTRYMAP to plink (PED)
5.4 years ago by BlastedBadger ▴ 140
0
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1
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3.6k
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Comment: C: Convert SNP dataset from PACKEDANCESTRYMAP to plink (PED)
5.4 years ago by BlastedBadger ▴ 140
0
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4
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3.6k
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Convert SNP dataset from PACKEDANCESTRYMAP to plink (PED)
SNP plink
5.5 years ago by BlastedBadger ▴ 140
1
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0
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2.1k
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Answer: A: Where has the R Ape 'chronogram' function gone (Non-Parametric Rate Smoothing)?
5.7 years ago by BlastedBadger ▴ 140
2
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4
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1.5k
views
UPGMA method when tree leaves have different known ages
phylogeny dating UPGMA molecular clock time-tree
updated 5.8 years ago by 52k • written 5.8 years ago by ▴ 140
0
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1
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1.5k
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Comment: C: UPGMA method when tree leaves have different known ages
5.8 years ago by BlastedBadger ▴ 140
2
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1
reply
1.1k
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Inconsistent query coordinates between chain and net alignments in UCSC
alignment chain net UCSC
6.0 years ago by BlastedBadger ▴ 140
1
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0
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1.1k
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Answer: A: Inconsistent query coordinates between chain and net alignments in UCSC
6.0 years ago by BlastedBadger ▴ 140
0
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0
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3.5k
views
Comment: C: Get dS numbers _per branch_ with PAML codeml (or branch length estimates)
6.4 years ago by BlastedBadger ▴ 140
31 results • Page 1 of 1
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