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3.2k
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Comment: Comment: dN/dS in a tree (multiple genes)
17 months ago by BlastedBadger ▴ 160
5
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2
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3.2k
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dN/dS in a tree (multiple genes)
dN/dS dNdS KaKs Phylogenetics PAML
17 months ago by BlastedBadger ▴ 160
0
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1
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596
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Comment: Comment: How can we Convert .smp files to .hmm files ?
21 months ago by BlastedBadger ▴ 160
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0
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507
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Answer: Answer: Group rows in table based on column
21 months ago by BlastedBadger ▴ 160
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0
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537
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Comment: Comment: Conserved domains in multiple sequence alignment
23 months ago by BlastedBadger ▴ 160
0
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0
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429
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Different ESS estimates of Tracer VS tracecomp
mcmc ess tracer phylobayes bayesian
21 months ago by BlastedBadger ▴ 160
0
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0
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743
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Answer: Answer: Simulation of dna sequences through substitution rates
2.3 years ago by BlastedBadger ▴ 160
2
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3
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942
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Tool to visualize alignment comparisons / Alignment diff
alignment visualization diff
updated 2.3 years ago by ★ 2.0k • written 2.3 years ago by ▴ 160
2
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0
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1.2k
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Comment: Comment: t-SNE analysis on multiple fasta files in R
2.3 years ago by BlastedBadger ▴ 160
0
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0
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956
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Answer: Answer: Alignment of protein sequence to Pfam seed alignment
2.3 years ago by BlastedBadger ▴ 160
0
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1
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858
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Answer: Answer: Simulation - Evolution of the number of genes
2.3 years ago by BlastedBadger ▴ 160
0
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0
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523
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Input alignment for Beast as an external *link* in the XML control file.
Beast Beast2 beastGen Beauti
3.3 years ago by BlastedBadger ▴ 160
3
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2
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2.4k
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Where has the R Ape 'chronogram' function gone (Non-Parametric Rate Smoothing)?
R ape chronogram NPRS Phylogenetic dating
updated 4.4 years ago by 20 • written 6.9 years ago by ▴ 160
2
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0
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769
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Answer: A: Syntax highlighting for PAML's control files in Vim
4.4 years ago by BlastedBadger ▴ 160
2
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1
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769
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Syntax highlighting for PAML's control files in Vim
PAML Vim
4.4 years ago by BlastedBadger ▴ 160
1
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0
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8.5k
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Answer: A: Convert Nexus format to Newick format
4.7 years ago by BlastedBadger ▴ 160
2
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0
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1.0k
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Why is an hclust plot not ultrametric with "average" agglomeration method?
hierarchical clustering R
5.2 years ago by BlastedBadger ▴ 160
1
vote
1
reply
980
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Comment: C: Stratify phylogeny based on variables - e.g. which ST are represented by high %
5.3 years ago by BlastedBadger ▴ 160
0
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0
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980
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Comment: C: Stratify phylogeny based on variables - e.g. which ST are represented by high %
5.3 years ago by BlastedBadger ▴ 160
0
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0
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1.6k
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Comment: C: Extract species tree from the Ensembl Compara database
5.3 years ago by BlastedBadger ▴ 160
1
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3
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1.6k
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Extract species tree from the Ensembl Compara database
tree EnsEMBL database
updated 5.3 years ago by 23k • written 5.3 years ago by ▴ 160
2
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2
replies
4.0k
views
Get dS numbers _per branch_ with PAML codeml (or branch length estimates)
PAML codeml dS substitution rates phylogeny
updated 6.1 years ago by ▴ 200 • written 7.5 years ago by ▴ 160
0
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0
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4.3k
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Comment: C: Convert SNP dataset from PACKEDANCESTRYMAP to plink (PED)
6.6 years ago by BlastedBadger ▴ 160
0
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1
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4.3k
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Comment: C: Convert SNP dataset from PACKEDANCESTRYMAP to plink (PED)
6.6 years ago by BlastedBadger ▴ 160
0
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4
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4.3k
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Convert SNP dataset from PACKEDANCESTRYMAP to plink (PED)
SNP plink
6.6 years ago by BlastedBadger ▴ 160
1
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0
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2.4k
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Answer: A: Where has the R Ape 'chronogram' function gone (Non-Parametric Rate Smoothing)?
6.8 years ago by BlastedBadger ▴ 160
2
votes
4
replies
1.8k
views
UPGMA method when tree leaves have different known ages
phylogeny dating UPGMA molecular clock time-tree
updated 6.9 years ago by 54k • written 6.9 years ago by ▴ 160
0
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1
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1.8k
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Comment: C: UPGMA method when tree leaves have different known ages
6.9 years ago by BlastedBadger ▴ 160
2
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1
reply
1.2k
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Inconsistent query coordinates between chain and net alignments in UCSC
alignment chain net UCSC
7.1 years ago by BlastedBadger ▴ 160
1
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0
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1.2k
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Answer: A: Inconsistent query coordinates between chain and net alignments in UCSC
7.1 years ago by BlastedBadger ▴ 160
0
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0
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4.0k
views
Comment: C: Get dS numbers _per branch_ with PAML codeml (or branch length estimates)
7.5 years ago by BlastedBadger ▴ 160
31 results • Page 1 of 1
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