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1.4k
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Answer: Answer: Looking for a tool which provides mapping quality score distributions from BAM f
10 months ago by Dave Carlson ▴ 660
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371
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Comment: Comment: Does PLINK2 have the function of batch processing ?
11 months ago by Dave Carlson ▴ 660
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1.4k
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Comment: Comment: Statistics analysis of assembled genome from PacBio HiFi reads using Hifiasm
13 months ago by Dave Carlson ▴ 660
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1
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1.4k
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Comment: Comment: Statistics analysis of assembled genome from PacBio HiFi reads using Hifiasm
13 months ago by Dave Carlson ▴ 660
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0
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1.1k
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Comment: Comment: Error in library(preproc) : there is no package called ‘preproc’
14 months ago by Dave Carlson ▴ 660
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1
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1000
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Comment: Comment: Generate a file with SNPs given a WGS dataset
14 months ago by Dave Carlson ▴ 660
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1
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1000
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Comment: Comment: Generate a file with SNPs given a WGS dataset
14 months ago by Dave Carlson ▴ 660
1
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1
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1000
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Answer: Answer: Generate a file with SNPs given a WGS dataset
14 months ago by Dave Carlson ▴ 660
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0
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388
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Answer: Answer: Phylip/Paml alignment output file explanation ?
14 months ago by Dave Carlson ▴ 660
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1
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657
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Comment: Comment: Issues downloading fastq data
15 months ago by Dave Carlson ▴ 660
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1
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1.4k
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Comment: Comment: extract unmapped reads from the paired end samples using hisat2
15 months ago by Dave Carlson ▴ 660
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1.4k
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Comment: Comment: extract unmapped reads from the paired end samples using hisat2
15 months ago by Dave Carlson ▴ 660
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2.4k
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Comment: Comment: Transcriptome assembly -- fastp vs Trimmomatic
15 months ago by Dave Carlson ▴ 660
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2.0k
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Comment: Comment: Pipeline transposable elements
15 months ago by Dave Carlson ▴ 660
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0
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648
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Answer: A: Interpreting first round of maker
15 months ago by Dave Carlson ▴ 660
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603
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Answer: A: Concatenating single gene alingments
15 months ago by Dave Carlson ▴ 660
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511
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Comment: C: OMA standalone, parallelization
16 months ago by Dave Carlson ▴ 660
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1
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1.3k
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Comment: C: Blastn, need help to increase speed
16 months ago by Dave Carlson ▴ 660
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313
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Comment: C: Very strange duplicate output with stand alone blast
16 months ago by Dave Carlson ▴ 660
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0
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990
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Comment: C: repeat masker output looks weird: 0% for all of repeat squences
16 months ago by Dave Carlson ▴ 660
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0
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742
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Answer: A: Pacific Bio Long Reads vs Illumina Short Reads
16 months ago by Dave Carlson ▴ 660
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469
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Answer: A: Is there a site that provides genome size sort?
17 months ago by Dave Carlson ▴ 660
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0
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1.2k
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Answer: A: Split multifasta-file into multiple files according to a pattern in header
17 months ago by Dave Carlson ▴ 660
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671
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Comment: C: bcftools variant calling
17 months ago by Dave Carlson ▴ 660
3
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1
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671
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Answer: A: bcftools variant calling
17 months ago by Dave Carlson ▴ 660
2
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2
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808
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Answer: A: Help with parallelization and loop cutadapt
18 months ago by Dave Carlson ▴ 660
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1
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777
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Comment: C: How does DEseq calculate p value when n=1?
19 months ago by Dave Carlson ▴ 660
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2.0k
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Answer: A: vcf format to Mapmaker format
21 months ago by Dave Carlson ▴ 660
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1.2k
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Comment: C: Gene ID's for a trinity assembled de novo transcriptome
21 months ago by Dave Carlson ▴ 660
2
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1
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1.2k
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Answer: C: Gene ID's for a trinity assembled de novo transcriptome
22 months ago by Dave Carlson ▴ 660
2
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0
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768
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Comment: C: RNA-seq: how to handle biological replicates for differential expression analysi
22 months ago by Dave Carlson ▴ 660
2
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1
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470
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Compiling a list of MPI-compatible tools
software MPI
22 months ago by Dave Carlson ▴ 660
2
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0
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919
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Answer: A: bowtie2 maximum value of MAPQ
22 months ago by Dave Carlson ▴ 660
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2.3k
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Comment: C: How to remove gaps from sequence alignment?
22 months ago by Dave Carlson ▴ 660
2
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0
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2.5k
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Answer: A: prokka for several files at once
2.3 years ago by Dave Carlson ▴ 660
2
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0
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622
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Answer: A: repeatmasker plain text into gtf
2.3 years ago by Dave Carlson ▴ 660
3
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1
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39k
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Answer: A: Up-to-date Online RNA Sequence Analysis Training/Courses/Papers?
updated 2.5 years ago by 36k • written 6.4 years ago by ▴ 660
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1.1k
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Comment: C: Has anyone used BP&P (Bayesian phylogenetics and phylogeography)?
updated 2.5 years ago by 36k • written 6.5 years ago by ▴ 660
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794
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Comment: C: Assembling haplotypes of a highly heterozygous gene cluster with canu
2.6 years ago by Dave Carlson ▴ 660
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0
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814
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Comment: C: Salmon RNA-seq quantification for repeated genome
2.6 years ago by Dave Carlson ▴ 660
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1
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814
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Comment: C: Salmon RNA-seq quantification for repeated genome
2.6 years ago by Dave Carlson ▴ 660
1
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1
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1.3k
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Comment: C: How should I use skewer to trim paired end reads?
2.6 years ago by Dave Carlson ▴ 660
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0
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3.2k
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Answer: A: GATK multiple samples
2.7 years ago by Dave Carlson ▴ 660
2
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0
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1.5k
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Comment: C: How to make a phylogenetic tree set in ASTRAL?
2.7 years ago by Dave Carlson ▴ 660
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0
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4.2k
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Comment: C: Why wont my newick file from MEGA open in FigTree?
2.7 years ago by Dave Carlson ▴ 660
3
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0
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808
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Answer: A: Removing the last part of fasta header in many alignmnet files
2.7 years ago by Dave Carlson ▴ 660
1
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0
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995
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Comment: C: how to use Ka/Ks calculator
2.7 years ago by Dave Carlson ▴ 660
1
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0
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467
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Answer: A: Remove and Substitute Fasta Header
2.7 years ago by Dave Carlson ▴ 660
1
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0
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11k
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Answer: A: Appropriate Podcasts For A Bioinformatician?
2.7 years ago by Dave Carlson ▴ 660
1
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2
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9.3k
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Comment: C: Pararellization in GATK 4
2.7 years ago by Dave Carlson ▴ 660
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