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2
votes
2
replies
1.4k
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Matched tumor/normal RNASeq expression counts in TCGA
tumor TCGA RNASeq expression normal
updated 2.9 years ago by • 0 • written 3.8 years ago by ▴ 250
3
votes
0
replies
12k
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Answer: Answer: Execute commands in Bash Chunk in Rmarkdown
3.4 years ago by ariel ▴ 250
0
votes
0
replies
600
views
What is the set of all possible GT calls for a VCF or gVCF for human data.
vcf
3.5 years ago by ariel ▴ 250
1
vote
1
reply
944
views
Tool: New VCF Header (schema) Parser---Please Break!!!
VCF header
updated 3.5 years ago by ★ 3.0k • written 3.5 years ago by ▴ 250
0
votes
1
reply
1.8k
views
Comment: Comment: How to create a new VCF 1) filtered by samples, and 2) with only selected fields
3.6 years ago by ariel ▴ 250
0
votes
7
replies
1.8k
views
How to create a new VCF 1) filtered by samples, and 2) with only selected fields
VCF bcftools
updated 2.3 years ago by 45k • written 3.6 years ago by ▴ 250
0
votes
1
reply
1.8k
views
Comment: Comment: How to create a new VCF 1) filtered by samples, and 2) with only selected fields
3.6 years ago by ariel ▴ 250
0
votes
0
replies
1.8k
views
Comment: Comment: How to create a new VCF 1) filtered by samples, and 2) with only selected fields
3.6 years ago by ariel ▴ 250
0
votes
0
replies
1.8k
views
Comment: Comment: How to create a new VCF 1) filtered by samples, and 2) with only selected fields
3.6 years ago by ariel ▴ 250
0
votes
0
replies
2.6k
views
Comment: Comment: Is there a database of bioinformatics tools & databases?
3.8 years ago by ariel ▴ 250
0
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1
reply
1.6k
views
Comment: Comment: Create BED- or GVCF-type file for human genome
4.3 years ago by ariel ▴ 250
0
votes
5
replies
1.6k
views
Create BED- or GVCF-type file for human genome
GRCh37 FASTA GVCF VCF hg19
updated 4.3 years ago by 45k • written 4.3 years ago by ▴ 250
0
votes
1
reply
1.3k
views
Buffer Error with bwa index
hg19 index bwa
updated 4.3 years ago by 166k • written 4.3 years ago by ▴ 250
4
votes
0
replies
1.1k
views
Allele Frequencies in Kaviar vs. gnomAD
gnomAD allele-frequency kaviar
4.4 years ago by ariel ▴ 250
0
votes
0
replies
3.5k
views
Comment: C: ClinVar Summary vs. VCF
4.8 years ago by ariel ▴ 250
0
votes
0
replies
9.6k
views
Answer: A: Programatically retrieving CLINVAR records, with the same detail level as it is
4.8 years ago by ariel ▴ 250
0
votes
1
reply
3.5k
views
Comment: C: ClinVar Summary vs. VCF
4.8 years ago by ariel ▴ 250
0
votes
1
reply
3.5k
views
Comment: C: ClinVar Summary vs. VCF
4.8 years ago by ariel ▴ 250
0
votes
6
replies
3.5k
views
ClinVar Summary vs. VCF
ClinVar
4.8 years ago by ariel ▴ 250
7
votes
1
reply
90k
views
Answer: A: How do I explain the difference between edgeR, LIMMA, DESeq etc. to experimental
5.8 years ago by ariel ▴ 250
0
votes
0
replies
3.0k
views
Comment: C: What is the current state-of-the-art for differential abundance in microbiome pa
5.9 years ago by ariel ▴ 250
0
votes
1
reply
3.0k
views
Comment: C: What is the current state-of-the-art for differential abundance in microbiome pa
5.9 years ago by ariel ▴ 250
5
votes
4
replies
3.0k
views
What is the current state-of-the-art for differential abundance in microbiome pathway analysis?
DESeq2 pathway analysis KEGG microbiome
5.9 years ago by ariel ▴ 250
1
vote
1
reply
3.6k
views
Comment: C: NOOB education needed for microbiome functional analysis (specifically PICRUSt2)
5.9 years ago by ariel ▴ 250
0
votes
1
reply
3.6k
views
Comment: C: NOOB education needed for microbiome functional analysis (specifically PICRUSt2)
5.9 years ago by ariel ▴ 250
2
votes
5
replies
3.6k
views
NOOB education needed for microbiome functional analysis (specifically PICRUSt2).
microbiome 16s functional-analysis picrust
5.9 years ago by ariel ▴ 250
2
votes
5
replies
4.1k
views
R package for Unifrac and Weighted Unifrac other than Phyloseq?
R
updated 6.1 years ago by 20 • written 6.3 years ago by ▴ 250
0
votes
0
replies
4.1k
views
Comment: C: R package for Unifrac and Weighted Unifrac other than Phyloseq?
6.2 years ago by ariel ▴ 250
0
votes
1
reply
4.1k
views
Comment: C: R package for Unifrac and Weighted Unifrac other than Phyloseq?
6.2 years ago by ariel ▴ 250
2
votes
3
replies
2.5k
views
Normalization for microbiome 16s sequence analysis.
RNA-Seq 16s microbiome MiSeq
6.2 years ago by ariel ▴ 250
2
votes
1
reply
2.5k
views
Answer: A: Normalization for microbiome 16s sequence analysis.
6.2 years ago by ariel ▴ 250
0
votes
0
replies
2.6k
views
Answer: A: How to normalize my results after DESeq2
6.3 years ago by ariel ▴ 250
0
votes
0
replies
2.1k
views
Comment: C: simple explanation needed
6.3 years ago by ariel ▴ 250
2
votes
0
replies
2.6k
views
A modern way to perform the analysis that LEfSe does?
lefse microbiome effect size LDA
6.4 years ago by ariel ▴ 250
1
vote
1
reply
2.6k
views
Comment: A: How to integrate and visualize RNASeq / Proteomics data for metabolomics pathway
6.5 years ago by ariel ▴ 250
0
votes
0
replies
40k
views
Comment: C: How is the design in DESeq2 work?
6.5 years ago by ariel ▴ 250
0
votes
0
replies
6.2k
views
Comment: A: NtSeq: JavaScript bioinformatics library for nucleotide sequence manipulation an
9.3 years ago by ariel ▴ 250
1
vote
0
replies
25k
views
Comment: C: Genotype Likelihoods
9.7 years ago by ariel ▴ 250
38 results • Page 1 of 1
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