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2
votes
2
replies
572
views
Matched tumor/normal RNASeq expression counts in TCGA
tumor TCGA RNASeq expression normal
updated 12 weeks ago by • 0 • written 14 months ago by ▴ 220
3
votes
0
replies
6.9k
views
Answer: Answer: Execute commands in Bash Chunk in Rmarkdown
8 months ago by ariel ▴ 220
0
votes
0
replies
163
views
What is the set of all possible GT calls for a VCF or gVCF for human data.
vcf
10 months ago by ariel ▴ 220
1
vote
1
reply
356
views
Tool: New VCF Header (schema) Parser---Please Break!!!
VCF header
updated 10 months ago by ★ 2.8k • written 10 months ago by ▴ 220
0
votes
1
reply
729
views
Comment: Comment: How to create a new VCF 1) filtered by samples, and 2) with only selected fields
11 months ago by ariel ▴ 220
0
votes
7
replies
729
views
How to create a new VCF 1) filtered by samples, and 2) with only selected fields
VCF fields bcftools header samples
11 months ago by ariel ▴ 220
0
votes
1
reply
729
views
Comment: Comment: How to create a new VCF 1) filtered by samples, and 2) with only selected fields
11 months ago by ariel ▴ 220
0
votes
0
replies
729
views
Comment: Comment: How to create a new VCF 1) filtered by samples, and 2) with only selected fields
11 months ago by ariel ▴ 220
0
votes
0
replies
729
views
Comment: Comment: How to create a new VCF 1) filtered by samples, and 2) with only selected fields
11 months ago by ariel ▴ 220
0
votes
0
replies
807
views
Comment: Comment: Is there a database of bioinformatics tools & databases?
14 months ago by ariel ▴ 220
0
votes
1
reply
732
views
Comment: Comment: Create BED- or GVCF-type file for human genome
19 months ago by ariel ▴ 220
0
votes
5
replies
732
views
Create BED- or GVCF-type file for human genome
GRCh37 FASTA GVCF VCF hg19
updated 19 months ago by 37k • written 19 months ago by ▴ 220
0
votes
1
reply
463
views
Buffer Error with bwa index
hg19 index bwa
updated 19 months ago by 152k • written 19 months ago by ▴ 220
3
votes
0
replies
630
views
Allele Frequencies in Kaviar vs. gnomAD
gnomAD allele-frequency kaviar
21 months ago by ariel ▴ 220
0
votes
0
replies
1.1k
views
Comment: C: ClinVar Summary vs. VCF
2.2 years ago by ariel ▴ 220
0
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0
replies
6.6k
views
Answer: A: Programatically retrieving CLINVAR records, with the same detail level as it is
2.2 years ago by ariel ▴ 220
0
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1
reply
1.1k
views
Comment: C: ClinVar Summary vs. VCF
2.2 years ago by ariel ▴ 220
0
votes
1
reply
1.1k
views
Comment: C: ClinVar Summary vs. VCF
2.2 years ago by ariel ▴ 220
0
votes
6
replies
1.1k
views
ClinVar Summary vs. VCF
ClinVar
2.2 years ago by ariel ▴ 220
5
votes
1
reply
47k
views
Answer: A: How do I explain the difference between edgeR, LIMMA, DESeq etc. to experimental
3.2 years ago by ariel ▴ 220
0
votes
0
replies
1.9k
views
Comment: C: What is the current state-of-the-art for differential abundance in microbiome pa
3.3 years ago by ariel ▴ 220
0
votes
1
reply
1.9k
views
Comment: C: What is the current state-of-the-art for differential abundance in microbiome pa
3.3 years ago by ariel ▴ 220
5
votes
4
replies
1.9k
views
What is the current state-of-the-art for differential abundance in microbiome pathway analysis?
DESeq2 pathway analysis KEGG microbiome
3.3 years ago by ariel ▴ 220
1
vote
1
reply
2.3k
views
Comment: C: NOOB education needed for microbiome functional analysis (specifically PICRUSt2)
3.3 years ago by ariel ▴ 220
0
votes
1
reply
2.3k
views
Comment: C: NOOB education needed for microbiome functional analysis (specifically PICRUSt2)
3.3 years ago by ariel ▴ 220
2
votes
5
replies
2.3k
views
NOOB education needed for microbiome functional analysis (specifically PICRUSt2).
microbiome 16s functional-analysis picrust
3.3 years ago by ariel ▴ 220
2
votes
5
replies
2.9k
views
R package for Unifrac and Weighted Unifrac other than Phyloseq?
R
updated 3.5 years ago by 20 • written 3.6 years ago by ▴ 220
0
votes
0
replies
2.9k
views
Comment: C: R package for Unifrac and Weighted Unifrac other than Phyloseq?
3.6 years ago by ariel ▴ 220
0
votes
1
reply
2.9k
views
Comment: C: R package for Unifrac and Weighted Unifrac other than Phyloseq?
3.6 years ago by ariel ▴ 220
2
votes
1
reply
1.6k
views
Answer: A: Normalization for microbiome 16s sequence analysis.
3.6 years ago by ariel ▴ 220
2
votes
3
replies
1.6k
views
Normalization for microbiome 16s sequence analysis.
RNA-Seq 16s microbiome MiSeq
3.6 years ago by ariel ▴ 220
0
votes
0
replies
1.2k
views
Answer: A: How to normalize my results after DESeq2
3.6 years ago by ariel ▴ 220
0
votes
0
replies
1.4k
views
Comment: C: simple explanation needed
3.6 years ago by ariel ▴ 220
2
votes
0
replies
2.0k
views
A modern way to perform the analysis that LEfSe does?
lefse microbiome effect size LDA
3.8 years ago by ariel ▴ 220
1
vote
1
reply
1.5k
views
Comment: A: How to integrate and visualize RNASeq / Proteomics data for metabolomics pathway
3.8 years ago by ariel ▴ 220
0
votes
0
replies
23k
views
Comment: C: How is the design in DESeq2 work?
3.9 years ago by ariel ▴ 220
0
votes
0
replies
4.8k
views
Comment: A: NtSeq: JavaScript bioinformatics library for nucleotide sequence manipulation an
6.7 years ago by ariel ▴ 220
1
vote
0
replies
18k
views
Comment: C: Genotype Likelihoods
7.0 years ago by ariel ▴ 220
38 results • Page 1 of 1
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