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questions
2
votes
2
replies
891
views
Matched tumor/normal RNASeq expression counts in TCGA
tumor
TCGA
RNASeq
expression
normal
updated 17 months ago by
rmelias2
• 0 • written 2.4 years ago by
ariel
▴ 250
0
votes
0
replies
324
views
What is the set of all possible GT calls for a VCF or gVCF for human data.
vcf
2.1 years ago by
ariel
▴ 250
0
votes
7
replies
1.1k
views
How to create a new VCF 1) filtered by samples, and 2) with only selected fields
VCF
bcftools
updated 10 months ago by
Ram
43k • written 2.2 years ago by
ariel
▴ 250
0
votes
5
replies
1.1k
views
Create BED- or GVCF-type file for human genome
GRCh37
FASTA
GVCF
VCF
hg19
updated 2.8 years ago by
Ram
43k • written 2.8 years ago by
ariel
▴ 250
0
votes
1
reply
835
views
Buffer Error with bwa index
hg19
index
bwa
updated 2.8 years ago by
Pierre Lindenbaum
161k • written 2.8 years ago by
ariel
▴ 250
4
votes
0
replies
868
views
Allele Frequencies in Kaviar vs. gnomAD
gnomAD
allele-frequency
kaviar
3.0 years ago by
ariel
▴ 250
0
votes
6
replies
1.8k
views
ClinVar Summary vs. VCF
ClinVar
3.4 years ago by
ariel
▴ 250
5
votes
4
replies
2.3k
views
What is the current state-of-the-art for differential abundance in microbiome pathway analysis?
DESeq2
pathway analysis
KEGG
microbiome
4.5 years ago by
ariel
▴ 250
2
votes
5
replies
2.8k
views
NOOB education needed for microbiome functional analysis (specifically PICRUSt2).
microbiome
16s
functional-analysis
picrust
4.5 years ago by
ariel
▴ 250
2
votes
5
replies
3.5k
views
R package for Unifrac and Weighted Unifrac other than Phyloseq?
R
updated 4.7 years ago by
Biostar
20 • written 4.8 years ago by
ariel
▴ 250
2
votes
3
replies
1.9k
views
Normalization for microbiome 16s sequence analysis.
RNA-Seq
16s
microbiome
MiSeq
4.8 years ago by
ariel
▴ 250
2
votes
0
replies
2.2k
views
A modern way to perform the analysis that LEfSe does?
lefse
microbiome
effect size
LDA
5.0 years ago by
ariel
▴ 250
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