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Answer: Answer: 50% Missed exons when trying to replicate annotation reference
3.7 years ago by liorglic ★ 1.5k
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1
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2.6k
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Answer: Answer: Best practice for RNA-Seq aligned sequences data for visualization via IGV
3.7 years ago by liorglic ★ 1.5k
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0
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1.4k
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Answer: Answer: Using Minimap2 with FMLRC2
3.7 years ago by liorglic ★ 1.5k
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0
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1.9k
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Answer: Answer: Using samtools faidx with a large list of genomic loci
3.7 years ago by liorglic ★ 1.5k
1
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1
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842
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Comment: Comment: Are RFLP and ITS both molecular markers?
3.7 years ago by liorglic ★ 1.5k
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0
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3.4k
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Comment: Comment: Snakemake command line arguments
3.7 years ago by liorglic ★ 1.5k
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0
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917
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Comment: Comment: Count number of values in a nested dictionary
3.7 years ago by liorglic ★ 1.5k
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0
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1.1k
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Answer: Answer: Mapping genes from VCF by exclusively using python
3.7 years ago by liorglic ★ 1.5k
0
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1
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1.7k
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Comment: Comment: asterisk in phylip file
3.7 years ago by liorglic ★ 1.5k
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0
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853
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Comment: Comment: Genome variants - regional distribution analysis
3.7 years ago by liorglic ★ 1.5k
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0
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2.8k
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Answer: Answer: Modern processing of VCF files in Python
3.7 years ago by liorglic ★ 1.5k
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0
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1.6k
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Comment: Comment: Is there a way to change only the header of a fasta file?
3.7 years ago by liorglic ★ 1.5k
1
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1
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1.6k
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Comment: Comment: Is there a way to change only the header of a fasta file?
3.7 years ago by liorglic ★ 1.5k
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0
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2.4k
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Comment: Comment: Generating Depth of Coverage files from vcf.
3.8 years ago by liorglic ★ 1.5k
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0
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711
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Better assembly results with lower depth !?
megahit assembly
3.8 years ago by liorglic ★ 1.5k
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1
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2.3k
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Comment: Comment: How to plot depth coverage plot?
3.8 years ago by liorglic ★ 1.5k
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0
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1.3k
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Comment: Comment: BAM - number of mapping positions per read
3.8 years ago by liorglic ★ 1.5k
1
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3
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1.3k
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BAM - number of mapping positions per read
sam bwa bowtie bam
3.8 years ago by liorglic ★ 1.5k
1
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2
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3.6k
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Answer: Answer: file size of pair-end sequencing fastq
3.8 years ago by liorglic ★ 1.5k
0
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1
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1.4k
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Comment: Comment: Script for chromosome features
3.9 years ago by liorglic ★ 1.5k
0
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1
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5.2k
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Comment: Comment: Simplify annotation file by collapsing gene isoforms into a single annotation pe
3.9 years ago by liorglic ★ 1.5k
0
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0
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1.2k
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Comment: Comment: Presence absence matrix from blast results
3.9 years ago by liorglic ★ 1.5k
0
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1
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1.4k
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Comment: Comment: Script for chromosome features
3.9 years ago by liorglic ★ 1.5k
2
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1
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5.2k
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Answer: Answer: Simplify annotation file by collapsing gene isoforms into a single annotation pe
3.9 years ago by liorglic ★ 1.5k
1
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1
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1.9k
views
Using Aspera to download from GSA (BIG)
Aspera GSA
updated 2.5 years ago by 45k • written 4.8 years ago by ★ 1.5k
1
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0
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1.9k
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Answer: Answer: Using Aspera to download from GSA (BIG)
3.9 years ago by liorglic ★ 1.5k
1
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0
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912
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Answer: Answer: extract entire header from BED file to FASTA
4.1 years ago by liorglic ★ 1.5k
0
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1
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955
views
Using protein domains for annotation validation
Interpro annotation domain InterproScan
updated 4.1 years ago by 27k • written 4.1 years ago by ★ 1.5k
0
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0
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2.6k
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Comment: Comment: Weird characters in yeast reference gff3
4.2 years ago by liorglic ★ 1.5k
2
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5
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2.6k
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Weird characters in yeast reference gff3
SGD gff3 yeast gff
4.2 years ago by liorglic ★ 1.5k
0
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0
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1.4k
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Answer: Answer: Histogram of Paired End Fragment Lengths
4.2 years ago by liorglic ★ 1.5k
0
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1
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4.5k
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Comment: Comment: Snakemake error: "Removing output files of failed job since they might be corru
4.2 years ago by liorglic ★ 1.5k
1
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1
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805
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Comment: Comment: how to splice a gene sequence
4.2 years ago by liorglic ★ 1.5k
0
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0
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954
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Comment: Comment: De Novo Assembly from Oligos
4.3 years ago by liorglic ★ 1.5k
3
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1
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2.3k
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Comment: Comment: Download multiple SRA samples and convert into fasta format at once
4.3 years ago by liorglic ★ 1.5k
1
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0
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1.5k
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Comment: Comment: Get read id's from .sam file
4.3 years ago by liorglic ★ 1.5k
0
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1
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1.3k
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Answer: Answer: Snakefile - problem with too many outputs
4.3 years ago by liorglic ★ 1.5k
3
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11
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2.6k
views
Simple genome annotation using transcripts data
annotation fasta gff
updated 4.3 years ago by ▴ 50 • written 5.3 years ago by ★ 1.5k
0
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0
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641
views
How to handle mis-annotated chimeric genes?
chimeric MAKER curation annotation
4.4 years ago by liorglic ★ 1.5k
0
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0
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5.3k
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Comment: A: Is the ENSEMBL FTP down?
4.5 years ago by liorglic ★ 1.5k
3
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6
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5.3k
views
Is the ENSEMBL FTP down?
ensembl ftp
updated 4.0 years ago by ▴ 940 • written 4.5 years ago by ★ 1.5k
1
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10
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7.3k
views
6 follow
IGV memory on Windows
igv gff
updated 4.7 years ago by ▴ 10 • written 5.4 years ago by ★ 1.5k
0
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0
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698
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Comment: C: Minia assembler _ header information
4.8 years ago by liorglic ★ 1.5k
1
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0
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1.9k
views
Answer: A: Is ENA API down?
4.8 years ago by liorglic ★ 1.5k
1
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2
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1.9k
views
Is ENA API down?
ena
4.8 years ago by liorglic ★ 1.5k
0
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1
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1.7k
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Answer: A: Alignng RNAseq data for gene prediction
5.0 years ago by liorglic ★ 1.5k
0
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1
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5.8k
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Comment: C: Reference-guided assembly from short reads
5.0 years ago by liorglic ★ 1.5k
0
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0
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2.3k
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Answer: A: Why does Maker-P output Match-part?
5.1 years ago by liorglic ★ 1.5k
0
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0
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2.3k
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Comment: C: Why does Maker-P output Match-part?
5.1 years ago by liorglic ★ 1.5k
0
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0
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1.9k
views
Comment: C: blastn much slower on longer subject sequences?
5.1 years ago by liorglic ★ 1.5k
284 results • Page 4 of 6
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